Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1187 ATGTCTCCGCCACTGCTGGTCACTGAAGACGAAGGGCAGAGCAATGCCTCAATGGTAGCATCTGCATGTTCACAATCCTTGGAATGTTTCTCCGCAAGTGAGGCTAGATTGAAAGAACGCAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGACAGTTCTACTGTCCCGAGCTTGGCTGATGAGAAAAAGGAGAACCTGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCCGGATCTTTTCTCATTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTGCTCATTGTCCCAAAAAACTGTGGTCTCAGGCAACAAAAGAGGTTTTGCTGACACTATGGACCCTGAGTTTCCTGGCAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGAGCTCAGCCGACCACAGTAAAAGAAATACCAAACAAGGTGTTACAAGAGCTTCCTTCTGCAGCAAATGGAACTGGTCATAACCATGCAGGAGCTTCTATCAGTAGCAGTGCACCAGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAGAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGACCAGCCACACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCGGGAAGAGAAATATTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATACGTACTCACCTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGGGATGTACCATGGGATATGTTCATTGACACGTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1050 0.4638 MSPPLLVTEDEGQSNASMVASACSQSLECFSASEARLKERNYLGLSDCSSVDSSTVPSLADEKKENLNLKATELRLGLPGSQSPERDPDLFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADTMDPEFPGNAGINMMLSPKPSGAQPTTVKEIPNKVLQELPSAANGTGHNHAGASISSSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPATLFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGAPGREILSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1187 349 Gene3D - 226 343 - -
Ssu5g1187 349 Pfam AUX/IAA family 72 340 IPR033389 -
Ssu5g1187 349 PANTHER AUXIN-INDUCED PROTEIN 2 342 - -
Ssu5g1187 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Ssu5g1187 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 342 IPR003311 GO:0005634|GO:0006355
Ssu5g1187 349 MobiDBLite consensus disorder prediction 171 193 - -
Ssu5g1187 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1187 Ssu-Chr5 39008296 39011728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1187 232 328 B3 DNA Binding Superfamily AT2G46530 36.082 6.18e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu5g1187 AUX_IAA 1.9e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1187 K14484 - gmx:100789251 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1916 2 71465023 71466427 Ssu5g1187 5 39008296 39011728 PCT