Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1184 ATGGAGCTTTCTCAACTTGGTTTCCTAGATGAGTTAGTAGCTCCAAGAAGAGACACATGGAATGCTTTGTCTACTGGGTTCTGTGAGCTATTGCCTAATAACGGTTGGAGTTTTGAATCTTTTCTTGAGAACCCATCTTTGACCACTTCAAACTCCCCATTTGGTGCATTTTCAACCGCAATAGACCGCAGATTTGAATGCCCTTACAGCAATGAAGTGGCAGCATACCCATTTGCTGATGGGTTCACAATGCCATTGCCAGAGCTTGAAACTGGGAATGATgacccaccaccaccacttccACCAGCAGTGGAGGATGAGGAGATTGGCTTTCTAGGCAGTGATGGCAAGAACTTTGAGGAAAGAAAGAGTGGCTGCAAAGTTGAGGAACAAGAGATTCCAGTCTTTAACATTGGCATGTGTGATGCTGGAGAGAGAAAACCCAAGTCCAAGAAGCTTGAAGGACAACCCTCAAAGAATCTCATGGcagagagaaggagaagaaagcGTCTCAATGACCGTCTTTCCATGCTGAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGGGATACCATAGACTACATGAAAGAGCTTCTGGAAAGGATTGGTAAGTTGCAAGAGGAAGAGGGGGAAGAGGGCACAAGTCAGATAAATCTGTTGGGCATTTCAAAGGAACAACTCAAGCCAAATGAAGCAATAGTAAGAAACTCCCCCAAGTTTGATGTTGACAGGAGAGACCAGGACACCAGGATCAGCATCTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACCTTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGTTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTGGCTGAGCAGAGAAATTGTATTAGCCATGAAGAGATAAAACAAGCACTATTCAGAAATGCAGGCTTTGGTGGGAAATGTCTCTAG 990 0.4232 MELSQLGFLDELVAPRRDTWNALSTGFCELLPNNGWSFESFLENPSLTTSNSPFGAFSTAIDRRFECPYSNEVAAYPFADGFTMPLPELETGNDDPPPPLPPAVEDEEIGFLGSDGKNFEERKSGCKVEEQEIPVFNIGMCDAGERKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEGEEGTSQINLLGISKEQLKPNEAIVRNSPKFDVDRRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMEASCSEVAEQRNCISHEEIKQALFRNAGFGGKCL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1184 329 PANTHER - 2 329 - -
Ssu5g1184 329 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 329 - -
Ssu5g1184 329 SMART finulus 161 210 IPR011598 GO:0046983
Ssu5g1184 329 CDD ACT_UUR-ACR-like 255 295 - -
Ssu5g1184 329 Pfam Helix-loop-helix DNA-binding domain 161 204 IPR011598 GO:0046983
Ssu5g1184 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Ssu5g1184 329 Gene3D - 144 205 IPR036638 GO:0046983
Ssu5g1184 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 217 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1184 Ssu-Chr5 38735272 38736662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1184 77 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 54.331 5.73e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1184 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1184 - - gmx:100806571 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1913 2 71397880 71399266 Ssu5g1184 5 38735272 38736662 PCT