Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1178 ATGGCTATAACACAAACTCCATTTCCCACTCTCATGATTTTCCTCAGTTTTCTGTTGCTACTCAGCAATGTCAACTCCGATTCACTTTCATTCAGCTTCTCCAATTTTGGGCCCGGACAAGATTTCGATATTGGTTTCCTTGGCGATGCGCGTCCATTAGGCGGTGCAATACAATTGACAAGAAGAGATAATGGAGCATACGGCACTCCCACTATTCGCCAACACAGTGTTGGTCGTGCAGTTTATATTCCACCCGTGCGCCTCTGGGACAAAACCACAGGCAGACTTGCTGACTTCGAAACAGAGTTCTCCTTTGTGGTAGATCCCGCTGGTTCACAAATCCATGCCGATGGCTTCTCCTTTTTCATCTTACCATTCGATGCTGACCCCAGAATTCCTAAGAATTCATCTGGGGGATACCTTGGGCTATTCAGTCCCGAAACTGCTTTCAACGCatacaaaaatcaaattgtGGCTGTTGAGTTTGACAGCTTCGGAAATGAATGGGATCCCAAGCCTGTAGCCGTTGCTCCTCATATTGGAATTGACGTCAACTCTCTTGCATCGGTGAAAACTATAGACTGGCCTATTAATTCTGTTCCTCAAGGTTCGGTTGGAAAAGCTAGCATTACCTATGATTCTAATGCTAAAGAATTGAGTGTCACGGTTGGCTATGCTACTCAACCCGCCATTATTGTTGGCTTCACACAAACCATTGATTTGAGGGCTGTTCTGCCGGAATGGGTTAGAATTGGTTTCTCTGGTGCCACTGGTGATAAGGTTGAAACCCATGACATTCTTTCTTGGTCTTTCAGTTCACGCATCTAG 828 0.4493 MAITQTPFPTLMIFLSFLLLLSNVNSDSLSFSFSNFGPGQDFDIGFLGDARPLGGAIQLTRRDNGAYGTPTIRQHSVGRAVYIPPVRLWDKTTGRLADFETEFSFVVDPAGSQIHADGFSFFILPFDADPRIPKNSSGGYLGLFSPETAFNAYKNQIVAVEFDSFGNEWDPKPVAVAPHIGIDVNSLASVKTIDWPINSVPQGSVGKASITYDSNAKELSVTVGYATQPAIIVGFTQTIDLRAVLPEWVRIGFSGATGDKVETHDILSWSFSSRI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1178 275 Pfam Legume lectin domain 28 273 IPR001220 GO:0030246
Ssu5g1178 275 ProSitePatterns Legume lectins beta-chain signature. 158 164 IPR019825 -
Ssu5g1178 275 CDD lectin_legume_LecRK_Arcelin_ConA 29 274 IPR001220 GO:0030246
Ssu5g1178 275 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 2 275 - -
Ssu5g1178 275 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 274 IPR013320 -
Ssu5g1178 275 Gene3D - 26 275 - -
Ssu5g1178 275 PANTHER LECTIN 2 275 - -
Ssu5g1178 275 PIRSF Plant_L_lectin 2 275 IPR016363 GO:0030246
Ssu5g1178 275 ProSitePatterns Legume lectins alpha-chain signature. 245 254 IPR000985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1178 Ssu-Chr5 38466634 38467461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1178 12 275 Receptor kinase-like Gene Family AT5G10530 38.686 1.47e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1178 - - gmx:100786214 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1178 5 38466634 38467461 Ssu2g1900 2 71191338 71192204 PCT