Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1177 ATGGCTTTGTACAACACAAAGCCCGGTTTCTTGCTCCTCCTTCCATTCCTAATGCTGCATCGCAATTCGGATACATCTTTCAAATTCCCCAACTTTTCAGGGCCATACACAAACACCCTTTTAACCTTCCAAGGCGATGCCTCTGTATCAAGGGGTGTCATACAACCAACAATGGTCCAACAAAACGGTGCTATCATGCCCAACAGTGCTGGCAGAGCCACCTATACTCTGCCCGTGCGCATTTGGGATGCACAAACCGGTAAGGTGGCAGGCTTCATCACTACCTTCTCTTTTAAGATATTGAATGCTCCAGGTTATGGAGATGGAATCTCTTTCTTCCTTGCACCATTCCGATCTGAGATGCCCCAAGATTCAGATGGTGGGTACCTCGGACTCTTCAGTCCCCGCACTGCTTTGAGAAATACCAACCAAAACCAAATAGTTGCCGTTGAATTTGACACGCACCCAAATGAATGGGACCCTGCTTTTTCCCACATAGGCATTGATATTAACTCCATTTCTTCGGTAACAACGGTGCAATGGGAAAAGGATCCTGGGTTGCTAACAGTATTTGCCACCGTAACCTATGACCCTGTGGCACGAAATTTGAGCGTGGTTGTAAGAAACGGAGGACCTACGATTAGCCATGTGATTGATTTGAGGACCGTTCTTCCTGAATGGGTCAGCGTTGGCTTCTCCGGTGCCACCGGACGGCTCACTGAACAATACGAGATTCAATCTTGGACTTTCAGTTCTAGCTTCGATTAG 768 0.474 MALYNTKPGFLLLLPFLMLHRNSDTSFKFPNFSGPYTNTLLTFQGDASVSRGVIQPTMVQQNGAIMPNSAGRATYTLPVRIWDAQTGKVAGFITTFSFKILNAPGYGDGISFFLAPFRSEMPQDSDGGYLGLFSPRTALRNTNQNQIVAVEFDTHPNEWDPAFSHIGIDINSISSVTTVQWEKDPGLLTVFATVTYDPVARNLSVVVRNGGPTISHVIDLRTVLPEWVSVGFSGATGRLTEQYEIQSWTFSSSFD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1177 255 CDD lectin_legume_LecRK_Arcelin_ConA 25 254 IPR001220 GO:0030246
Ssu5g1177 255 ProSitePatterns Legume lectins beta-chain signature. 148 154 IPR019825 -
Ssu5g1177 255 PANTHER LEGUME LECTIN BETA DOMAIN PROTEIN 17 253 - -
Ssu5g1177 255 PIRSF Plant_L_lectin 7 255 IPR016363 GO:0030246
Ssu5g1177 255 ProSitePatterns Legume lectins alpha-chain signature. 224 233 IPR000985 -
Ssu5g1177 255 Gene3D - 23 255 - -
Ssu5g1177 255 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 254 IPR013320 -
Ssu5g1177 255 Pfam Legume lectin domain 25 253 IPR001220 GO:0030246
Ssu5g1177 255 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 17 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1177 Ssu-Chr5 38452683 38453450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1177 10 255 Receptor kinase-like Gene Family AT5G10530 36.029 5.63e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1177 - - ccaj:109818639 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1900 2 71191338 71192204 Ssu5g1177 5 38452683 38453450 PCT
Ssu5g1177 5 38452683 38453450 Ssu2g1899 2 71182254 71183099 PCT