Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1174 ATGGCTTTCTTCACCTCTGCTTCATACTCTAATCAAACCCAAAAGACCCCGTTGTTCATATTTATCACCTTCACTTTGTTCCATACACTCTTTAACACTGTAGAGGCCGTTTCCTTCAACTTTTCGAGCTTCCAGCAGtcaaacttaaataatctaataaacTTTACGGGTGATGCCTTTTCCTCAAACGGTGTTCTGCAACTCACAAAGAACCAAATTGATGACACCATCACATTCAGCGTTGGTCGAGCCTCGTATGACCAACCAGTGAAGCTTTGGGATAGAGGAACAAAGAAGCTCACGGACTTCACAACCCATTTCTCTTTTGTCATGAAAGCTGTTGACCCAACACGGTTTGGTGACGGGTTAGCCTTCTTCATCGCACCATTTGATTCTGCCATTCCAAACAATTCAGCTGGTGGGTACCTTGGTCTATTCAGCAACGAATCCGCATTCAACACTAGCAAAAATCAGTTAGTGGCAGTTGAGTTCGACAGTTTCAAGAACTATTGGGATCCGAGCTCTGATCATGTAGGGATCAATGTCAATTCCATTCAATCAGTTGCAAATGTCACTTGGAAGAGCAACATTAAGAACGGGTCAATTGCTAATGCTTGGATATGGTATAACTCCACAACTAAAAATCTCTCTGTCTTCCTTACTTATGCTAATAATCCAACCTTTGATGGAAATTCTAGTCTTTGGTATGTCATTGATTTGAGGGACGTGTTGCCAGAGTTTGTTAGAATAGGCTTTTCGGCTGCTACAGGTTCATGGATTGAAATACACAACATTCTGTCTTGGTCATTCAATTCAAACTTGGAGGAGGGTGGTAGGAAAAAGTTTAAGGTTGTTTTAGTAGTTGGTTTAAgtgttggtttgggttgtttaGCTTGTGTTGTAGGTCTATTATGGTTTATCTTTTGGAGAAGGAGAAATGGACCAAATGGTGGAAAGGAGGAGAATAGAGGTGTTGATGCTTCTATTGATGATGAGTTTGAGAGAGGAACTGGTCCAAAGAGGTTCACCTATCGGGAACTAAGCAGTGCAACCAACAACTTTGCAGAAGAAGGAAAGCTAGGAGAAGGAGGATTTGGAGGTGTTTACAAAGGTTTACTTGAAAACTCCAACCTTGAAGTGGCTGTGAAGAGGGTTTCAAAAGGGTCAAAACAAGGGAAAAAGGAATACGTATCAGAAGTGAGAGTTATCAGCCGGTTGAGACATAGAAACTTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGAGCTCCTTCTTGTTTATGAATACATGCCTAATGGAAGCCTTGATTCTCATTTATTTGGAAATAGGGTCATGCTTTCATGGGTGGTGAGATACAAGGTAGCCTTAGGTCTGGCATCTGCTCTTCTTTATCTTCATGAAGAGTGGGAACAATGTGTGGTGCATAGAGATATTAAGTCAAGTAATGTCATGTTGGATGCAAATTTCAATGCCAAGCTTGGTGACTTTGGTCTTGCAAGGCTGGTAGACCATGAACTCGGTTCTCAGACCACTGTTTTGGCAGGCACCATGGGGTACCTAGCCCCAGAGTGTGTTACCACGGGGAAATCCAGCAAGGAGTCTGATGTGTATAGCTTTGGTGTTGTTGCACTTGAAATCGCATGTGGTAGAAGACCGGTGGAAGTGAAAGAAGAGCCTGGTAAAGTTAGGCTTGTAGAGTGGGTGTGGAACCTCTATGGAAAAGGGAAACTAATTGAAGCAActgataagaaattaaattgggATTTTGAAGAACAGCAAATGGAATGCTTGATGATTGTTGGGTTGTGGTGTTGTCATCCTGATCATACCATGAGGCCCTCCATTAGGCAAGTGATAAGTGTCCTCAATTTTGAAGCCCCTTTGCCCAGTCTTCCATCCAAGTTGCCTGTGCCAATGTACTTTGCACCTCCCATGGAGATGTGCAAATTCTCCTACACTTCATCTGGCGCTACAAGCACAACCAAAGAATCGTCCTCATACTCATCAATGTCCGCAGGGTCcagaaaatctttattatag 2043 0.4151 MAFFTSASYSNQTQKTPLFIFITFTLFHTLFNTVEAVSFNFSSFQQSNLNNLINFTGDAFSSNGVLQLTKNQIDDTITFSVGRASYDQPVKLWDRGTKKLTDFTTHFSFVMKAVDPTRFGDGLAFFIAPFDSAIPNNSAGGYLGLFSNESAFNTSKNQLVAVEFDSFKNYWDPSSDHVGINVNSIQSVANVTWKSNIKNGSIANAWIWYNSTTKNLSVFLTYANNPTFDGNSSLWYVIDLRDVLPEFVRIGFSAATGSWIEIHNILSWSFNSNLEEGGRKKFKVVLVVGLSVGLGCLACVVGLLWFIFWRRRNGPNGGKEENRGVDASIDDEFERGTGPKRFTYRELSSATNNFAEEGKLGEGGFGGVYKGLLENSNLEVAVKRVSKGSKQGKKEYVSEVRVISRLRHRNLVQLIGWCHEQGELLLVYEYMPNGSLDSHLFGNRVMLSWVVRYKVALGLASALLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEIACGRRPVEVKEEPGKVRLVEWVWNLYGKGKLIEATDKKLNWDFEEQQMECLMIVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLPSKLPVPMYFAPPMEMCKFSYTSSGATSTTKESSSYSSMSAGSRKSLL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1174 680 CDD STKc_IRAK 368 624 - -
Ssu5g1174 680 Pfam Legume lectin domain 37 276 IPR001220 GO:0030246
Ssu5g1174 680 PANTHER - 28 656 - -
Ssu5g1174 680 ProSiteProfiles Protein kinase domain profile. 354 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1174 680 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Ssu5g1174 680 MobiDBLite consensus disorder prediction 658 680 - -
Ssu5g1174 680 PANTHER RECEPTOR LECTIN KINASE 28 656 - -
Ssu5g1174 680 ProSitePatterns Legume lectins alpha-chain signature. 244 253 IPR000985 -
Ssu5g1174 680 SUPERFAMILY Protein kinase-like (PK-like) 338 649 IPR011009 -
Ssu5g1174 680 CDD lectin_legume_LecRK_Arcelin_ConA 37 274 IPR001220 GO:0030246
Ssu5g1174 680 ProSitePatterns Legume lectins beta-chain signature. 160 166 IPR019825 -
Ssu5g1174 680 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Ssu5g1174 680 Gene3D Transferase(Phosphotransferase) domain 1 431 644 - -
Ssu5g1174 680 SMART serkin_6 354 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1174 680 Gene3D - 34 287 - -
Ssu5g1174 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 275 IPR013320 -
Ssu5g1174 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Ssu5g1174 680 Pfam Protein kinase domain 355 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1174 Ssu-Chr5 38253212 38255254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1174 34 641 Receptor kinase-like Gene Family AT5G10530 53.537 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu5g1174 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1174 - - gmx:100777201 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1899 2 71182254 71183099 Ssu5g1174 5 38253212 38255254 PCT