Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1173 ATGATGGAGAAGGAGAAGGTGGGGGGTAGGAGGAGCAAACGGGTTTTCTTCCTTTGGTGGTTTGGAATGACTCTGCGGCTGTTTTTCTTGCTCGGTGCCTGTTCTGAGAAGATAACATTTAGAAGAGGTTTAAGGGAAACCAGCaaaaattattctcattctGTGGTCATGCTGAATACAAATAATCGTCAAGAGTTGGTGGTTGACAACGGTATTGTTTCCGTCACTTTTTCAAGACCTGAGGGCTACATCCTTGGAATGTCATATAACGGAATTGACAATATACTTGAAGACGAAAACGAAGATCAAGATAGAGGGTACCTGGACGTCGTTTGGAATACACCAGGAAAGCCTAGTAATTTTCAGAGAATCCACGGGACAAATTTTTCGGTTATAGCAGCTGACGAGAATATGGTGGAGCTTTCATTTTCAAGAACATGGACATCTTCCATGAATGGCTCAAGTGTCCCCATGAACATTGACATGAGGTACATTTTGCGAAGTGGTGATTCAGGATTTTATTCATATGCGATATTTGATCGCCCTGAAGGATTGCCAGCGGTGGAGGTTGATCAAATTAGGATTGTTTACAAACTCAAGAAAGACAGGTGGATGACAAATACCAGTACTCATGTGAAAACATGGCTTAACACTGTTCATGGATGGCTCAGTCTTGATTCTGGTGCATCCGTGGGTTTCTGGATGATAACACCTAGTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACTTCCCATGTTGGCCCCATCACTCTATCAatgTTTGTGAGCACTCACTATGCTGGCAAGGAGGTAACCATGGCATTTCAAGGAGGGGAGACTTATAAAAAGGTTTTTGGTCCTGTATTTGCCTACGTTAACTCTGCTTCAAGCGAGAATGATACGCTATCTCTCTGGTCAGATGCTGCGCAGCAGCAATCCAAGGAAGTCAGAAGTTGGCCTTACGATTTTCCAAAATCAGAAGATTTCTTTCCACCCAATCAAAGGGGAATAGTTTTGGGAAGATTACTGGTCAAAGATTGGTACTTCAGAGGAGGTAGGCTTCTATATGCTAACAATGCTTATGTTGGTCTAGCTTTGCCTGGGGATGCAGGATCATGGCAGATAGAAAGCAAGGGTTATCAATTCTGGACTCAAGCCGATACAAAGGGTTTCTTCCTAATAAGTAATATTGTTCCTGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATATAATGCTACAATCACCATCACACCAGGAGGAGTCATCAAATTGGATTCACTTGTGTATATTCCTCCAAGAAATGGACCAACCATATGGGAAATTGGGTTTCCAGATCGCACAGCTGCAGAATTCTATGTACCAGACCCTTACCCTACGCTCATGAACAAATTATACAATGAACAGCGCAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATATCCAAATGATGATCTTGTTTATACTATTGGTGTTAGCAAGTATAATAAAGATTGGTTTTTTGCTCATGTTTCGAGAAGCACAGAAAATAAGACATACCAGCCAACGACATGGCAGATTATATTTGAACATCGAAATCAAATAATAAGAGGAAACTACACATTGCAACTGGCCTTGGCATGCACCGCCGATGCCGACCTGCAGGTTAGGTTCAATGACCCTAGCGCTAATCCACCAGACTTTGCTACGGGGAAAATAGGAGGAGATAGTGCCATAGCAAGGCATGGCGTGCATGGATTGTATAGGCTATTCAGCATTAACATACCAAGTGATCGTTTTGTGAAAGGAGCGAACACCATCTATCTGAGGCAGTCAAGAGCCATGAATCCTTTTCAAGGAGTTATGTATGATTATATCCGGAATACATTTTCAGTTATAGAGGCAAGCGAGAATCAAGTAGAGGTTTCGTTTTCAAGAATGTGGGACATGGACGGCTCAAGTCTCCCCTTTAACATAGACAAAAGGTACATTTTACGTAGAGGTAGTTCAGGAGTATACATATACGCTATATTTGAGCGTCCCGAAGATTTTCCTGCTCTGGAGATTGATCACATTAGGATCGTTTTCAAGTTACAAAAGGACAGGTTCCACTACATGGCTATAGCAGATGATAGGCAGCGAGTCATGCCAACGCCAGAAGATAGATCTATAGGGCAACGCCTTGATTTTGATGAAGCTGTTCTAATAACCAACCCTAGTAACCCGGAACTTCAAGGAGAGGTGGATGACAAATACCAATACTCTTGTGAGAACAAGGATAACAAACTTCATGGGTGGATAAACTTGGATTCCAAGTACAATGAATCTGTGGGCTTCTGGATGATGACCCCAAGTAATGAGTTCCGTAGTGGTGGGCCAATTAAGCAAGGCCTCACTTCTCATGTCGGGCCTGCCACTCTCAATATACTTCATACCACTCACTACTCGGGGAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGACCTTCAAGAAAGTTTATGGGCCCGTTTTTGCTTATCTCAACTCGGTTTCAAGTGGCCATGATTCACAAGCCCTTTGGAGTGATGCTGTACAACAGCTGTCCGAGGAAATCAAAAGTTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCCCAGCCAATAAAAGGGGAAGAGTGGAAGGACGATTACTAGTCCAAGACCGACACATTAAAGGAGGGAAATTTGTATATGGTGACAATGCTTATGTTGGTTTGGCTCTGCCTGGAGATGCTGGGTCATGGCAAAGACAAAGCAAGGGTTACCAATTCTGGACTGAAGCTGACAAAGTGGGCCACTTCACAATTGAAAATATTGTATCAGGGGACTACGATTTATATGCATGGGTTCCTGGCGTTTTTGGGGATTATAAATACAACACTACTATAACCATCACACCAGGATGTGTTATCCAATTGGATTCACTAATATTCAGTCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCTATGACCTCGTTTATAACGTTGATGTGAGTGATTATAGTAAAGATTGGTTTTATGCTCAGGTTCCCAGGAACATAGGAAACAACACATTTCGCCCAACAACATGGGAGATTAAATCCCATCTCCCATTTGTTATAAGAGGCATCTACACACTACGACTTGCCTTGGCCTCAGCCACACGTTCTAACTTGGCGGTTCGGTTCAATAACCCTGTGGCTCGTCCTCCACTCTTCTCTACAGGATTAATAGGAAGAGATAATGCCATAGCAAGACATGGCATTCATGGATTGTACTGGCCTTACAGCATTGAGGTACCTAGCCATCTATTGGTGGAAGGAACCAACACCATCTATCTGAGGCAGGCAAAAAGTCTAAGTCCTTTCCAAGGAGTTATGTATGACTACATCCGTTTGGAAAGACCTGAAACTTAG 3474 0.4289 MMEKEKVGGRRSKRVFFLWWFGMTLRLFFLLGACSEKITFRRGLRETSKNYSHSVVMLNTNNRQELVVDNGIVSVTFSRPEGYILGMSYNGIDNILEDENEDQDRGYLDVVWNTPGKPSNFQRIHGTNFSVIAADENMVELSFSRTWTSSMNGSSVPMNIDMRYILRSGDSGFYSYAIFDRPEGLPAVEVDQIRIVYKLKKDRWMTNTSTHVKTWLNTVHGWLSLDSGASVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQGGETYKKVFGPVFAYVNSASSENDTLSLWSDAAQQQSKEVRSWPYDFPKSEDFFPPNQRGIVLGRLLVKDWYFRGGRLLYANNAYVGLALPGDAGSWQIESKGYQFWTQADTKGFFLISNIVPGDYNLYAWVPGFIGDYRYNATITITPGGVIKLDSLVYIPPRNGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQRRDKFRQYGLWERYTDLYPNDDLVYTIGVSKYNKDWFFAHVSRSTENKTYQPTTWQIIFEHRNQIIRGNYTLQLALACTADADLQVRFNDPSANPPDFATGKIGGDSAIARHGVHGLYRLFSINIPSDRFVKGANTIYLRQSRAMNPFQGVMYDYIRNTFSVIEASENQVEVSFSRMWDMDGSSLPFNIDKRYILRRGSSGVYIYAIFERPEDFPALEIDHIRIVFKLQKDRFHYMAIADDRQRVMPTPEDRSIGQRLDFDEAVLITNPSNPELQGEVDDKYQYSCENKDNKLHGWINLDSKYNESVGFWMMTPSNEFRSGGPIKQGLTSHVGPATLNILHTTHYSGKEVTMAFQEGETFKKVYGPVFAYLNSVSSGHDSQALWSDAVQQLSEEIKSWPYDFPKSDDFFPANKRGRVEGRLLVQDRHIKGGKFVYGDNAYVGLALPGDAGSWQRQSKGYQFWTEADKVGHFTIENIVSGDYDLYAWVPGVFGDYKYNTTITITPGCVIQLDSLIFSPPRNGPTIWEIGIPDRSAAEFYDLVYNVDVSDYSKDWFYAQVPRNIGNNTFRPTTWEIKSHLPFVIRGIYTLRLALASATRSNLAVRFNNPVARPPLFSTGLIGRDNAIARHGIHGLYWPYSIEVPSHLLVEGTNTIYLRQAKSLSPFQGVMYDYIRLERPET 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1173 1157 Gene3D - 632 865 IPR014718 GO:0030246
Ssu5g1173 1157 SUPERFAMILY Galactose mutarotase-like 60 301 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu5g1173 1157 CDD RGL4_M 337 437 IPR029413 -
Ssu5g1173 1157 Pfam Rhamnogalacturonate lyase family 631 756 IPR010325 -
Ssu5g1173 1157 Pfam Rhamnogalacturonate lyase family 52 204 IPR010325 -
Ssu5g1173 1157 CDD RGL4_C 1003 1153 - -
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 204 - -
Ssu5g1173 1157 CDD RGL4_M 891 991 IPR029413 -
Ssu5g1173 1157 SUPERFAMILY Galactose-binding domain-like 998 1153 IPR008979 -
Ssu5g1173 1157 Pfam Polysaccharide lyase family 4, domain III 1001 1152 IPR029411 -
Ssu5g1173 1157 Pfam Polysaccharide lyase family 4, domain III 447 635 IPR029411 -
Ssu5g1173 1157 Gene3D - 445 631 - -
Ssu5g1173 1157 Gene3D - 998 1153 - -
Ssu5g1173 1157 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Ssu5g1173 1157 Pfam Polysaccharide lyase family 4, domain II 915 987 IPR029413 -
Ssu5g1173 1157 SUPERFAMILY Galactose-binding domain-like 444 635 IPR008979 -
Ssu5g1173 1157 SUPERFAMILY Starch-binding domain-like 336 436 IPR013784 GO:0030246
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 217 635 - -
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 204 - -
Ssu5g1173 1157 CDD RGL4_N 57 304 - -
Ssu5g1173 1157 CDD RGL4_C 449 635 - -
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 637 1016 - -
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1017 1156 - -
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 637 1016 - -
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 217 635 - -
Ssu5g1173 1157 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1017 1156 - -
Ssu5g1173 1157 CDD RGL4_N 632 854 - -
Ssu5g1173 1157 SUPERFAMILY Galactose mutarotase-like 668 853 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu5g1173 1157 SUPERFAMILY Starch-binding domain-like 887 989 IPR013784 GO:0030246
Ssu5g1173 1157 Gene3D - 887 989 - -
Ssu5g1173 1157 Gene3D - 338 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1173 Ssu-Chr5 38061738 38113074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1173 56 635 Polysaccharide Lyase AT1G09910 49.123 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1173 K18195 - gmx:100776664 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1898 2 71094608 71101820 Ssu5g1173 5 38061738 38113074 PCT