Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1172 ATGGTGGTTCCACCAGAAATCGAGCATCCCAGGATAGCTTGTGGATGGGCAGCTAGAGACACATCTGGGGTTCTCTGCCCTTTCAAGTTCTCAAgaagGGAAACAAGAGAGAAAGATGTAACATTCAAAGTGTTATACTGTGGTATATGTCACtcggacctccacatgttgaaGAATCAATGGGGCATGTCCACTTATCCCGTAGTACCGGGTATGCTTTGTGCTATATTAACgtacttaaaaGTAGGAAGCAAGGTACATAAGTTCAAAGTAGGAGACAAGGTGGGTGTGGGGTGCATGGTTCTATCTTGTCGCTCATGCCAAAGCTGTGCTAACAATCTTGCGAGTCATTGTCCAAAAATGATTATGATGACGTATGGTGGCAGGTATGTTGATGGCACCACCACATACAGAGGCTACTTTAACCTAATGGTTGTAGATGAACACTTTGTGATCCACATTCTTGATGGACTACCTCTTGATGTTGCTACTCCTCTCCTCTGTGCTGAGATCACAGTTTTTAGTCCTCTGAGATATTTTGGACTTGACAAGCTAGGCTTGCAATTTGGTGTGGTTAGTTTTGGTGGCCTTGGCCATATGGCTGTCAAGTTTGCCAAAGCTTTTGGGGCTAAGGTCACAGTAATTAACACATCTCCCAACAAAAAGAAGGAAGCTATTGAACATCTTGGAGCTGACTCATTTGTGGTTAGTAGTGATCAAATGCAGGTACCCTTTTGGAAGCTTTCCATAATTTAcaaagaaataatcattttgCCTTTTAGTTTTACTCAAGAAGCTGCAAAAAATGTATGCATTGGTTTTACATAA 828 0.3986 MVVPPEIEHPRIACGWAARDTSGVLCPFKFSRRETREKDVTFKVLYCGICHSDLHMLKNQWGMSTYPVVPGMLCAILTYLKVGSKVHKFKVGDKVGVGCMVLSCRSCQSCANNLASHCPKMIMMTYGGRYVDGTTTYRGYFNLMVVDEHFVIHILDGLPLDVATPLLCAEITVFSPLRYFGLDKLGLQFGVVSFGGLGHMAVKFAKAFGAKVTVINTSPNKKKEAIEHLGADSFVVSSDQMQVPFWKLSIIYKEIIILPFSFTQEAAKNVCIGFT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1172 275 Pfam Zinc-binding dehydrogenase 196 239 IPR013149 -
Ssu5g1172 275 PANTHER ALDEHYDE REDUCTASE 2 243 - -
Ssu5g1172 275 SUPERFAMILY GroES-like 20 184 IPR011032 -
Ssu5g1172 275 Gene3D - 175 257 - -
Ssu5g1172 275 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 2 243 - -
Ssu5g1172 275 Gene3D - 5 174 - -
Ssu5g1172 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 240 IPR036291 -
Ssu5g1172 275 CDD CAD1 15 239 - -
Ssu5g1172 275 Pfam Alcohol dehydrogenase GroES-like domain 38 152 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1172 Ssu-Chr5 38022580 38031110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1172 13 243 Monolignol Biosynthesis Gene Families AT4G37990 62.931 6.67e-90 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1172 - K23232 mnt:21385910 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1172 5 38022580 38031110 Ssu5g1172 5 38022580 38031110 PCT