Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1170 ATGTCTATTCTCTACAACAACTGCGCGAGCTCCCACTCACACGCGTGGTCCTTCAAAAAAGAAACCTTGACCAATTCTTATGTTGGGGCTTTGAGGAGCAATCTTGTGGTGGAACTTTCAAGCTGGTCTCTCTTTGGTAATCAGGATCTTGGTTTTGGCATATTCATGGAGACTCAAAATCAATCAGAGCCTACAGAAGGATTAAAAAGGATGCTTCCTCCACCGCCTGGAAAGAAAGCTTTTAAGTCATGGTGGCCAAATAGGTCTATCCCTGTCGAGACAAACAATAATTCGTCTGATGATTCATTAAACCAAAACTACCAGCTGCTGAAGGTCCCAAATTTTATTGgaggtaaatttgttgattccCAGGGTTCTGTAATCATTGATGTTATAAATCCTGCAACACAAGAAGTTGTATCTCAAGTTCATTTAACTACATATGAAGAGTTTAAAACTGCAGTTAGTGCAGCCACGCAAGCTTTTCCTTCATGGAAAAACACTCCTATCACCACTCGTCAACGTATTATGTTTAAACTTCAGGAGCTTATCTGCAGAGATATTgaTAAGCTTGCCATGAACATCACCATAGAACAGGGCAAGACATTAAAAGGTGCCAAAAGAGACGTGCTTCATGGTTTAGAAGTGGTGGAGCATGCTTGTGGGATGGCAAACCTGCAAATGGGAGAATTTGTCCCTAATGCCTACAATGGGATTGATACATACTGCATTAGAGAGCCCCTTGGAGTTTGTGCTGGAATATGCCCCTTTAACTTTCCAGCAACAATACCATTGTGGatGTTCCCCATTGCAGTTACATGTGGCAACACTTATATTCTCAAGCCATGTGAGGAAAATCCAGGGGCTTCAATGATACTTGCAGTACTAGCGAAAGAAGCTTGTTTGCCAGATGGTGTATTAAATATTGTTCATGGTACCAATGATATTGTTAATTACATATGCGATGATGAAGATATAAAAGCTGTATCGTTTGTTGGTCCAATTACAgcTGGAATATATGCCACGGCTGCTGCTAGAGGGAAACGTGTTCAGTCAAATGCAGGTGGCATAAATCATGTACTTTTAATGCCCGATGCTAGATTGGATGCTACTTTAGATGCCCTTGTTCCTGCTGGCTTTGGTGCTGCAGGAGAGAGGTGCATGACTTTAAGCATAGCTGTTTTTGTTGGAGGTTCAATGCAATGGGAAGAAAAACTAGTGCAGCGTGCCAAATTACTTAAAGTGAATGCAGGAACAGATCCTACTGCAGACATTGGTCCAGTTATTAGCAAAGAGGAAAAGGAGAGGATATGTAGACTAGTTCAGAGCAGTGTTGAAAATGGGGCTAGACTTCTACTTGATGGAAGAGATATTGTGATACCAGGATATCAGAGCGGAAACTTTGTCGGTCCTACTATCCTATGTGATGTTACAACCAGCATGGAATGTTACAAGGAAGAAATTTTCGGACCAGTTCTACTTTGCATGCAGGCTGACAACCTAGATGAGgctatatcaataataaataaaaacagATATGGAAATGGAGCTTCTATATTCACCACCTCTGGTATAGCTGCTAGGAGGTTCCAGAATGAGATTGAGGCTGGACTGGTTGGAATCAATGTGCCTGTACCTATTCCATTACCATTTTCCTCCAATGGGTCAAAAGCATCTTTCGCTGGTGATAGTTTTTGTGGAAAAGCAGGAGTACAGTTTTATACCCAAATCAAAACAATGGCACAACAATGGAAGGATTTCCCTACACAAGGAGTATTCCCTGCTGCATATCCATCTGAGAGAGATTCACCTAGGCAATTGTCACAAGCCATGCCTGTACAATCTGAAAGTGATTCGCCAACCTATGAAGTACAAGTGGCCATCACTGATGCAGATATACCAAACACAACCATGTCATCTGCATCTCCATCGACCGATAAGGATCACGGAAGCCAGGATGTTTCCTTAGTGCTGCCTTCAACATCTAAGAGGGATATGTCGGATGAGGATATATCACTGGTATTATCACCAGCATTGCAAAGGGATTTACCTAGCCAAGGAGTATCCATAGCCACACCACACGCGTCAGAGAGGATTTATGTTTCTGAAACGTCTCAGTGGAATGAAAATTCACCAGCAACATCTCAAAGGAGTGAAATTCCACCAACTTCTGAGAGGAGTCATGTGTCTGCATCTCAGATGAATGGAAACTTATTTACCCCCAAGAGGACTGATACTGCTAGAGCTTTGAAACCAGAGGGGATATACATGTCTATGTCACATAAAACTGATAACATAGCTCAAATATCACAAGGGAGTGATAACATCAGTCCAGCGTCTCATAGGATGGATGCTACTGTACATTCAAACTCTGATGAGGCACACATACTGGCAGCATCTCATTTGAATGAAAGTATTGGTCAAACATTTGATAGAACCGACCCCATGTTTCCAACTTCTGAGAGAATATACATGGCTTCAACATCTCACAGGAATGACCAGATTGGCTCAACATCTCAAAGGACTGATATAGGCCTACATCAGACTACAGAGAGAATTTATATCCCCGCAGCATCTCAGAGAAATGAAAGCATTAGTCCAGCTTGTCAGCTTGATGACGCTTTGCCTTCTACTTCTGAGAGGATCTTCATGCCCCCAATGGTACAGAATATGCCGCCAAGCTCGGAGAGGTTATATATTCCTGCAAGTTCTCAAAGGATGTATAATCAAAACCCAATAATTTCAATGGATGAATTTCCCAGCCAAGCTTTGCCATCATCTCAGAGGATATAA 2793 0.4146 MSILYNNCASSHSHAWSFKKETLTNSYVGALRSNLVVELSSWSLFGNQDLGFGIFMETQNQSEPTEGLKRMLPPPPGKKAFKSWWPNRSIPVETNNNSSDDSLNQNYQLLKVPNFIGGKFVDSQGSVIIDVINPATQEVVSQVHLTTYEEFKTAVSAATQAFPSWKNTPITTRQRIMFKLQELICRDIDKLAMNITIEQGKTLKGAKRDVLHGLEVVEHACGMANLQMGEFVPNAYNGIDTYCIREPLGVCAGICPFNFPATIPLWMFPIAVTCGNTYILKPCEENPGASMILAVLAKEACLPDGVLNIVHGTNDIVNYICDDEDIKAVSFVGPITAGIYATAAARGKRVQSNAGGINHVLLMPDARLDATLDALVPAGFGAAGERCMTLSIAVFVGGSMQWEEKLVQRAKLLKVNAGTDPTADIGPVISKEEKERICRLVQSSVENGARLLLDGRDIVIPGYQSGNFVGPTILCDVTTSMECYKEEIFGPVLLCMQADNLDEAISIINKNRYGNGASIFTTSGIAARRFQNEIEAGLVGINVPVPIPLPFSSNGSKASFAGDSFCGKAGVQFYTQIKTMAQQWKDFPTQGVFPAAYPSERDSPRQLSQAMPVQSESDSPTYEVQVAITDADIPNTTMSSASPSTDKDHGSQDVSLVLPSTSKRDMSDEDISLVLSPALQRDLPSQGVSIATPHASERIYVSETSQWNENSPATSQRSEIPPTSERSHVSASQMNGNLFTPKRTDTARALKPEGIYMSMSHKTDNIAQISQGSDNISPASHRMDATVHSNSDEAHILAASHLNESIGQTFDRTDPMFPTSERIYMASTSHRNDQIGSTSQRTDIGLHQTTERIYIPAASQRNESISPACQLDDALPSTSERIFMPPMVQNMPPSSERLYIPASSQRMYNQNPIISMDEFPSQALPSSQRI 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1170 930 CDD ALDH_F6_MMSDH 112 584 IPR010061 GO:0004491
Ssu5g1170 930 Pfam Aldehyde dehydrogenase family 120 579 IPR015590 GO:0016491
Ssu5g1170 930 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 78 677 IPR010061 GO:0004491
Ssu5g1170 930 MobiDBLite consensus disorder prediction 703 740 - -
Ssu5g1170 930 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 356 548 IPR016163 GO:0016620
Ssu5g1170 930 MobiDBLite consensus disorder prediction 602 654 - -
Ssu5g1170 930 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 78 677 - -
Ssu5g1170 930 SUPERFAMILY ALDH-like 106 586 IPR016161 GO:0016491
Ssu5g1170 930 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 113 584 IPR010061 GO:0004491
Ssu5g1170 930 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 115 579 IPR016162 GO:0016491
Ssu5g1170 930 MobiDBLite consensus disorder prediction 596 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1170 Ssu-Chr5 37895043 37937158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1170 111 585 Aldehyde Dehydrogenase Gene Family AT2G14170 71.757 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1170 K00140 - gmx:100796803 1385.16