Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1161 ATGGTGGTTGGTCCAAATCCGCTCAAGGACACGACAGACAACGATGGAAGTCGGTCCAGATCTGCGGTGGTGCTTGGTCTAGATTTGCTCAAGGCTAAGATGGCGAAGCTGGCAGAGCAAGCCGAGCGCTACGAGGAGATGGTGGAGTTCATGGAGAAGGTCTCTGCCACCATCGAGAACGAGGAACTCACCATGGAGGAGCGCAACCTCCTCTCTGTCATGGGCAGCGCAAAGGTTGACAATGGTGTAGGAGTGCTCCtaacctttctctctctctctctttctcatcTGCAACCAAATCAATCCCATAGCGAGCGCTCCTTCCCCTGCAAAGAGTTCGTGTACATGGAGAAGCTAGCGGAGCAAGCctag 372 0.5 MVVGPNPLKDTTDNDGSRSRSAVVLGLDLLKAKMAKLAEQAERYEEMVEFMEKVSATIENEELTMEERNLLSVMGSAKVDNGVGVLLTFLSLSLSHLQPNQSHSERSFPCKEFVYMEKLAEQA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1161 123 PANTHER 14-3-3-LIKE PROTEIN-RELATED 33 74 - -
Ssu5g1161 123 SUPERFAMILY 14-3-3 protein 33 89 IPR036815 -
Ssu5g1161 123 Coils Coil 27 61 - -
Ssu5g1161 123 Gene3D - 31 83 IPR036815 -
Ssu5g1161 123 Pfam 14-3-3 protein 34 74 IPR023410 -
Ssu5g1161 123 PANTHER 14-3-3 PROTEIN 33 74 IPR000308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1161 Ssu-Chr5 37373286 37373827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1161 34 73 14-3-3 family AT1G78300 85.000 3.44e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1161 K06630 - thj:104800142 74.7146