Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1158 ATGCGAACCATCGACAATCACCGTGACAAATCTCCGTTAGCCACATCGACGTCGCGACTTGAATTGCCGGTGACCACCGTTACCCCGACACGAATTAGTAGCGGCTTGGCCTGGTGCTATCTATTTGTGCCTGATGCTATTGTTGTAAGCGCTGGTAGTGCACGATGGAAAGCCGCCATTGTTGTAGCTCAGAAAGATTTTGATGAACCTGTCCATCTTGCTCCAACTAGCCTCCACTTTGGGGACACCAAATACATGGAAATCCAGGGAGAGCCAAGAGCTATTAAGTTTGACGATATTAATGGTATCATGAACTATTTTGATGAATCTGACCATCTTGCTCCTACTGGCCTCCACCTTGGGGACACCAAATACATGGTAATCAAGGGAGAGCCAGGAGCTGTCATCTGTGGAAAAAAGGTTGGGAAGGCTCTCTTTGATAGGCAACTGCGGGAAGTTTACTTTAGCGGATAA 474 0.4747 MRTIDNHRDKSPLATSTSRLELPVTTVTPTRISSGLAWCYLFVPDAIVVSAGSARWKAAIVVAQKDFDEPVHLAPTSLHFGDTKYMEIQGEPRAIKFDDINGIMNYFDESDHLAPTGLHLGDTKYMVIKGEPGAVICGKKVGKALFDRQLREVYFSG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1158 157 PRINTS Plant profilin signature 65 79 IPR005455 GO:0003779
Ssu5g1158 157 PRINTS Plant profilin signature 84 93 IPR005455 GO:0003779
Ssu5g1158 157 Gene3D Dynein light chain 2a, cytoplasmic 93 149 - -
Ssu5g1158 157 PANTHER PROFILIN-4 95 141 - -
Ssu5g1158 157 PANTHER PROFILIN-4 63 95 - -
Ssu5g1158 157 PANTHER PROFILIN 95 141 IPR005455 GO:0003779
Ssu5g1158 157 PANTHER PROFILIN 63 95 IPR005455 GO:0003779
Ssu5g1158 157 PRINTS Profilin signature 93 113 IPR005455 GO:0003779
Ssu5g1158 157 PRINTS Profilin signature 117 131 IPR005455 GO:0003779
Ssu5g1158 157 Pfam Profilin 96 141 IPR005455 GO:0003779
Ssu5g1158 157 SUPERFAMILY Profilin (actin-binding protein) 95 142 IPR036140 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1158 65 95 Cytoskeleton Gene Families AT4G29340 67.742 6.87e-08 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1158 K05759 - gmx:100778045 76.6405