Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1157 ATgaaagacaagaaaaagaacCGAAAGCTGGACTTAGCGTTGATGATGGGGAGCCAGAAGAAAGATTTTGCGTGTGACGACGACGTATTGGCGTCGCCGAGGGACGTGTTTGGGGTTCCTATTTCGGGGACGGATTCGGACAGCACAGGGAGCAGTGCCTATAGCGGGCCTGGGTCTCCGGGCATGGGTCCACAACGGGCCCAAGGGAAAGAATGGCAGGTCCAGCAATGGAGGGCGATGATCGATGCGCTGAGGTTCAAGTCCGTTAGAAGATTCTCGACGATTCCTCTGCTTGCGGCGAGCTACGAGATCTCTAAGAGGAGCCTGAGGAACAAGTTGGCGCGTCTTCGCGCCGGTAATTACGACGACGACTTGGATGGCGCTATTGGTATTGACGGTATTCCTACCAAGCCTTCGTGGAGGAACTTCAGCTACGCTGACCTCGCTGCTGCAACCGACGATTTCAGCGCTGAGAACTTGATTGGGAAAGGTGGTCATGCTGAAGTCTACAAAGGATGCTTACCAGATGGTCAAGTTGTAGCAGTAAAGAGGCTAATGAGGAACGAAAAGGAAGCTGAGGACACAGCTGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACGTTAACCACCCCAATGCAACACACTTGATTGGGTTTGCGATCGACCATGGCCTCTACTTTGTTCTTCAATTCGCCCCACATGGAAGCCTTGCCTCTTTGCTCTTTGGTTCTGAATGTTTAGAGTGGAAGATAAGGTTTAAAGTCGCTGTTGGGGTAGCAAAAGGATTGCAGTATCTCCACCACGATTGCCCGAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACCACAATGATGAAGCTGAGATTTCAGACTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCCCACCATGTTGTCTTCCCAATAGAAGGCACATTCGGGTATTTGGCTCCAGAGTACTTTATGCATGGAATTGTGGATGAGAAGATTGATGTTTTTGCATTTGGGGTTTTGTTACTGGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGGGAAAGTCTTGTGATCTGGGCCAAACCACTGCTGGATGCAAAGTTGGTCAAAGACATGGCAGACCCCAGATTAGAAGAGAAATATGATCCCACAGAAATGAAGCGTGCCATGGCAACGGCTTCCATGTGTATCCATCACATGTCCTCTAAGCGGCCGTACATGAATCAGGTTGTGCTGCTGCTGAAAGGCGAAGAGGTGGCTATTGAACTCAACCAAAATTCGACATCTCCAAGATCGCTCTTGCTGGATGCATGTGACCTGGAAGATTATACTTGCTCTAATTATTTGAACGACCTCAACCGCCACAAGCAGTTAATCATGGAGTGA 1410 0.4823 MKDKKKNRKLDLALMMGSQKKDFACDDDVLASPRDVFGVPISGTDSDSTGSSAYSGPGSPGMGPQRAQGKEWQVQQWRAMIDALRFKSVRRFSTIPLLAASYEISKRSLRNKLARLRAGNYDDDLDGAIGIDGIPTKPSWRNFSYADLAAATDDFSAENLIGKGGHAEVYKGCLPDGQVVAVKRLMRNEKEAEDTAGDFLSELGIIAHVNHPNATHLIGFAIDHGLYFVLQFAPHGSLASLLFGSECLEWKIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNHNDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKIDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKLVKDMADPRLEEKYDPTEMKRAMATASMCIHHMSSKRPYMNQVVLLLKGEEVAIELNQNSTSPRSLLLDACDLEDYTCSNYLNDLNRHKQLIME 469
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1157 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Ssu5g1157 469 ProSiteProfiles Protein kinase domain profile. 155 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1157 469 SMART serkin_6 155 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1157 469 SUPERFAMILY Protein kinase-like (PK-like) 138 427 IPR011009 -
Ssu5g1157 469 Gene3D Phosphorylase Kinase; domain 1 133 230 - -
Ssu5g1157 469 Pfam Protein kinase domain 157 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1157 469 MobiDBLite consensus disorder prediction 38 71 - -
Ssu5g1157 469 Gene3D Transferase(Phosphotransferase) domain 1 234 439 - -
Ssu5g1157 469 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Ssu5g1157 469 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 1 469 - -
Ssu5g1157 469 MobiDBLite consensus disorder prediction 42 58 - -
Ssu5g1157 469 PANTHER OS08G0249100 PROTEIN 1 469 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu5g1157 Ssu-Chr5 37265384 37271794 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1157 139 445 Trihelix Transcription Factor Family AT5G38560 42.138 5.23e-70 233
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu5g1157 Pkinase 1.9e-40 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1157 - - gmx:100794225 754.592
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1879 2 70548433 70552627 Ssu5g1157 5 37265384 37271794 PCT