Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1155 ATGGCTGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCATGGAAATGCTGAGATCCCCGGACTCGCAGTTTGTTCCATACGACACTTCCTCTCACTGCCTCGTCGATAACATTTATGCCAAAAATGGGTGGACAAATTCCAAGGACTTGATGGATTCAGAGAGTGAGAACCAACCACTTGTGGTGCCGAAAATGGAAGATTTTTTTGACAACCAAACGGAGACTCAAGACGATTCGTCGTTGAACCAAATTTACGGCCGCGGCTCTGCCTCTGTTTACTTCAGCGACCAGCAAGATCTGAACGCGATTCCTGGGTTTCAAGCGTTCTCTTCGACCAACTCGGGCTCCGAGTTGGATGACTCAGCTTCCCACAAGACTCGGGCTGCACCCGGCGAGTTAGGTGCCGAGTCTTGCAAAAAAACTTTGTCTTTGTGTGATGTGACGCACGGTTCTGAGGATAAGGCCATCGTTGCGGTGGAATTTGATACACCGAAGAAGGTTGGTCATACCTGTGGCCAGCGAACTTCAATATACAGAGGGGTCACAAGACACCGATGGACGGGTAGATATGAAGCGCATCTTTGGGATAACAGCTGTAGACGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAAGAAAAGGCTGCGAGAGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACCAACGGCTACCACTAACTTTCCTATTTCCAATTATACAAAGGAAATAGAGGAGATGAAACATGCTGGAAAACAAGAATTCATTGCATCACTGCGAAGGAAAAGTAGTGGTTTTTCAAGGGGGGCTTCTGCTTACAGGGGTGTTACGAgGCATCATCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACATTTGCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGGGCAAACGCTGTAACCAATTTTGAGATGAGTAGATATGATGTGGAAGCTATATTGAATAGCTCTCTTCCAGTTGGTGGGGTAACAAAACGCTTGAAGCTTTCCCCAGAATCGGAGAACAAAGCTCCTATTAGTAGCAGTCAACAACCTCAGTGCACAAACGTGAGTGGCAGCATCAATTTCTCAAGCATTCAGCCAGTTGCTTCTATACCCTATGATTCTGCAAACACATGTTACCCCCACAACCTCTTCCACCACTTTCATCCTACCAACGGTGGAAGTAGCACAGCAGAGTCTGCTGCAACTGTGACCAATGCAACCACACTGACTACCCCACCACCCCCAGCAGTTCCTGGGTTCTTTATATGGCCTCATCAGCCCTATTGA 1374 0.476 MAGATNWLTFSLTPMEMLRSPDSQFVPYDTSSHCLVDNIYAKNGWTNSKDLMDSESENQPLVVPKMEDFFDNQTETQDDSSLNQIYGRGSASVYFSDQQDLNAIPGFQAFSSTNSGSELDDSASHKTRAAPGELGAESCKKTLSLCDVTHGSEDKAIVAVEFDTPKKVGHTCGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPISNYTKEIEEMKHAGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAILNSSLPVGGVTKRLKLSPESENKAPISSSQQPQCTNVSGSINFSSIQPVASIPYDSANTCYPHNLFHHFHPTNGGSSTAESAATVTNATTLTTPPPPAVPGFFIWPHQPY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1155 457 SMART rav1_2 280 344 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 SMART rav1_2 178 250 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 Pfam AP2 domain 280 330 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 Pfam AP2 domain 178 236 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 47 454 - -
Ssu5g1155 457 ProSiteProfiles AP2/ERF domain profile. 280 338 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 Gene3D AP2/ERF domain 280 340 IPR036955 GO:0003700|GO:0006355
Ssu5g1155 457 Gene3D AP2/ERF domain 178 246 IPR036955 GO:0003700|GO:0006355
Ssu5g1155 457 ProSitePatterns Legume lectins beta-chain signature. 158 164 IPR019825 -
Ssu5g1155 457 SUPERFAMILY DNA-binding domain 279 340 IPR016177 GO:0003677
Ssu5g1155 457 ProSiteProfiles AP2/ERF domain profile. 178 244 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 SUPERFAMILY DNA-binding domain 177 246 IPR016177 GO:0003677
Ssu5g1155 457 CDD AP2 177 246 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 454 - -
Ssu5g1155 457 CDD AP2 279 340 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 PRINTS Ethylene responsive element binding protein signature 320 340 IPR001471 GO:0003700|GO:0006355
Ssu5g1155 457 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1155 Ssu-Chr5 37230236 37235546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1155 51 379 AP2-EREBP Transcription Factor Family AT5G10510 59.694 1.87e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu5g1155 AP2 8.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1155 K09285 - gmx:100814405 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1878 2 70539188 70543656 Ssu5g1155 5 37230236 37235546 PCT