Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1153 ATGGTCACCATTGTGTCACCACCAAAGCAGATAACCACCATTGGCACCCATGGCCATTGGTGCGTCAACATTGCTGCCAACGCCCACCGCCTTGTACTCGCCTCATCAACCACCATGTCACCACCCTACGTCCCTTACAGGGCAGCTTGGTTCAATAAAATGGATGCAACTCAAACAGAAAAAATTTACGTTGCAGTTGGCTATGATATTCTAGATGGATTTCAAACTTTGAGTTGGGCTCTCAAGAAATGGAATTCCCATCCATGGTCTATAGTCATTCTACATGTGAAATACAACACTTCCAAGAAATATGTTACCACACTCCTTGGAAAACTCCCTGCAAAAGGCGCGTGTGAAAAGAACCTGGAACGTAGCATGAAATATGAGCAAAGGATAATCGAGAAGCTGCTTTCCAAGTATATAGCTTTATGTGACAACGTGCCAGCTGAAACATTTGAAGTCGAGAAATTTGATGAACCAATGCAAAAGCGTACCATAGACTTGATCTATGGTCTAGGAATAACGAAATTGATCATGGGATTTCTTCATGCATGCAATTCAATGACATTTATTACTTCTTCAATTCCATTTGTTCTCTGGTTTAGGAAATCAGAAGTTGACATTAACGGATTGTTCTACGTTCATCAGCACAAGCCTGCCTTCTGTGAGTTGTTCATTATTTGTGAAGGGAAACAGGTTACACCGCGAGTGAAGAATAATGAGATAATCATGGAGGATGATAATGGGGTCAAGATTGCCAGCAtgagagataaaataaattttaaagattggCTAGAGAGAATGTTCTTTGATAAAACCATTGACTCCCAACCTAGAAGTTCTTGCGGATCATCAACTTCCTCAACAAATTTGGAGTCCTATCTTAACCAGAATCAATGGGAGTTTAGTTTccaagaaattgaaaattatttgcagGAGTTACTGCCTTTAAATTTGGAGGAAGGAAGTTCTGGGCAAGACAACCAAGTTTCCCACATTAGCCCAATCGAGCCATATGTCGAAGAACAAAATATTGAGATCCTCAAAGATAAACTGAATGAAGCTTACAGAACCATccaaatgaaaaggaaagaagacGAGGCCAATTGGGAGAGACATGAGAAAGCTGAATGGGCTATTTATATATGCAACCGTCGGGAAGAAGAACTTGAATCTCtaataaagaaagaagtgaCAAGAAAGGAAGAACTAAAGAAGGAACTGGACGCAGTAAAAGAACAACTTCACGAAAATAGAATGGATATTGAAGAGAGCAAGAAAAGGCTTAGTTTAGTGGCAGAGCAGCAATCAGAGCTCCTAAACAGCCTTCATATTAGTACATTGGCAGTGTCACAAGCTGAAACCAAACTAGGGGAGGCATTGACTGAAAAGACAGAGATGCTTAGGGAGATGAATGATCTAAGGAGACAAAGGGATGGACTGAATAGAAGGATTCAgttttatcaaagaaaaagatgCCACAGGAATGAGTGTAGGCTGATAGAGAAGGGTTGTGGTTTAAGGGAGTACACAAAGGAGGAGATCATCTTAGCCACCCACAATTTTTCGGAGCAGATGAGGTTAAAATCTGGTGGGAATTGGACCAATGTGTATAGAGGACAAATTAACTATTCCACTGTTGCAATCAAGAAGCTCATTTCTCTTCCGGAGTTGTCCCAACTAGATTTCCAAGCCAAGGTGGGGTATCTTGGTAGTATTCGGCAACCTCATCTGGTTTCTGTGTTGGGCTTCTGCTCTGAGCCCAAATGCTTAGTTTTGGAATACATGCACAAACGCAGCTTGGAAGAAATGCTATTTTGTAGGAACAGTAGCCGGGCCTTGAGCTGGCGTGATTGCTTAAGGATAGCCGTTGAAGTTTGTTCAGGGCTGGGCTTTCTAAATGCAGCTCAGCCCAGGCCCATTATTCATTGTGTTCCCTCTCCATCCAAAATCCTCCTAGATTGCAATCTTGTTGCAAAAATCACAGGGTTTGGTCTTCCAGGGTGCAGTGAAGAATGTAATGATAATTCAGATATGAAGGCAATAGGGGTTTTATTGCAAAATCTATTGACTGGAAGAAGAAATTGGGTGACAATGGATACAGAGGCTTTTTTTGATGAGATTGGTGGGCAATGGCCATTGGATGTGGGAAGAGAAGTTGTGGGCTTAGCAATGCGGTGCATGTCCATGAACTGTGAGCCCAATGAAGAAATGAGCATAACAAGAGTCAGGGAGGAACTCAATGAGATTAGAAGAAAGGGTGATGACATGGTTTCTAGGGAAGGATGGAGGACTATAAATGGTGGAGATGTTGGACAGGACTCCACCCACGTGCCTAGTGTTTTCGTTTGCCCTATCCTTCAGttttatttcattaactTGCATGAAGAAAAAGATAATGAAAATCCACATATAGCAGCAGACGGATTTTCTTATGAGCTAGAAGCAATAGAAGAGTGGCTGCAATCGGGGCATGACATATCACCCAAAAACTTGACGCTGAAGCACAAATTACTTACCCCTAATCATACCCTCCGTTCCCTAATTCAGGACTGGCAAAGAAAGACAGCAGCTAAAGTTGCAAATTAA 2589 0.404 MVTIVSPPKQITTIGTHGHWCVNIAANAHRLVLASSTTMSPPYVPYRAAWFNKMDATQTEKIYVAVGYDILDGFQTLSWALKKWNSHPWSIVILHVKYNTSKKYVTTLLGKLPAKGACEKNLERSMKYEQRIIEKLLSKYIALCDNVPAETFEVEKFDEPMQKRTIDLIYGLGITKLIMGFLHACNSMTFITSSIPFVLWFRKSEVDINGLFYVHQHKPAFCELFIICEGKQVTPRVKNNEIIMEDDNGVKIASMRDKINFKDWLERMFFDKTIDSQPRSSCGSSTSSTNLESYLNQNQWEFSFQEIENYLQELLPLNLEEGSSGQDNQVSHISPIEPYVEEQNIEILKDKLNEAYRTIQMKRKEDEANWERHEKAEWAIYICNRREEELESLIKKEVTRKEELKKELDAVKEQLHENRMDIEESKKRLSLVAEQQSELLNSLHISTLAVSQAETKLGEALTEKTEMLREMNDLRRQRDGLNRRIQFYQRKRCHRNECRLIEKGCGLREYTKEEIILATHNFSEQMRLKSGGNWTNVYRGQINYSTVAIKKLISLPELSQLDFQAKVGYLGSIRQPHLVSVLGFCSEPKCLVLEYMHKRSLEEMLFCRNSSRALSWRDCLRIAVEVCSGLGFLNAAQPRPIIHCVPSPSKILLDCNLVAKITGFGLPGCSEECNDNSDMKAIGVLLQNLLTGRRNWVTMDTEAFFDEIGGQWPLDVGREVVGLAMRCMSMNCEPNEEMSITRVREELNEIRRKGDDMVSREGWRTINGGDVGQDSTHVPSVFVCPILQFYFINLHEEKDNENPHIAADGFSYELEAIEEWLQSGHDISPKNLTLKHKLLTPNHTLRSLIQDWQRKTAAKVAN 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1153 862 Coils Coil 345 369 - -
Ssu5g1153 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 776 861 IPR013083 -
Ssu5g1153 862 Coils Coil 457 491 - -
Ssu5g1153 862 Gene3D Phosphorylase Kinase; domain 1 506 595 - -
Ssu5g1153 862 Gene3D Transferase(Phosphotransferase) domain 1 601 759 - -
Ssu5g1153 862 ProSiteProfiles U-box domain profile. 801 859 IPR003613 GO:0004842|GO:0016567
Ssu5g1153 862 ProSiteProfiles Protein kinase domain profile. 523 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1153 862 PANTHER U-BOX KINASE FAMILY PROTEIN 57 857 - -
Ssu5g1153 862 Coils Coil 387 428 - -
Ssu5g1153 862 Pfam Protein tyrosine and serine/threonine kinase 532 667 IPR001245 GO:0004672|GO:0006468
Ssu5g1153 862 SUPERFAMILY Protein kinase-like (PK-like) 507 732 IPR011009 -
Ssu5g1153 862 SUPERFAMILY RING/U-box 770 856 - -
Ssu5g1153 862 Pfam U-box domain 802 855 IPR003613 GO:0004842|GO:0016567
Ssu5g1153 862 SMART Ubox_2 781 852 IPR003613 GO:0004842|GO:0016567
Ssu5g1153 862 PANTHER OS02G0152300 PROTEIN 57 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1153 Ssu-Chr5 37105995 37126426 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1153 56 862 U-box Gene Family AT5G65500 42.363 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu5g1153 PK_Tyr_Ser-Thr 2.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1153 - - gmx:100795815 1291.17