Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1150 ATGGTCACCATTGTGTCACCACCAAAGCAGATAACCACCATTGGCACCCATGGCCATTGGTGCGTCAACATTGCTGCCAACGCCCACCGCCTTGTACTCGCCTCATCAACCACCATGTCACCACCCTACGTCCCTTACAGGGCAGCTTGGTTCAATAAAATGGATGCAACTCAAACAGAAAAAATTTACGTTGCAGTTGGCTATGATATTCTAGATGGATTTCAAACTTTGAGTTGGGCTCTCAAGAAATGGAATTCCCATCCATGCTCTATAGTCATTCTACATGTGAAATACAACACTTCCAAGAAATATGTTACCACACTCCTTGGAAAACTCCCTGCAAAAGGCGCGTGTGAAAAGAACCTGGAACGTAGCATGAAATATGAGCAAAGGATAATCGAGAAGCTGCTTTCCAAGTATATAGCTTTATGTGACAACGTGCCAGCTGAAACATTTGAAGTCGAGAAATTTGATGAACCAATGCAAAAGCGTACCATAGACTTGATCTATGGTCTAGGAATAACGAAATTGATCATGGGATTTTCGTTCATGAAGCCTTCCTTGAAATCAGAAGTTGACATTAACGGATTGTTCTACGTTCATCAGCACAAGCCTGCCTTCTGTGAGTTGTTCATTATTTGTGAAGGGAAACAGGTTACACCGCGAGTGAAGAATAATGAGATAATCATGGAGGATGATAATGGGGTCAAGATTGCCAGCAtgagagataaaataaattttaaagattggCTAGAGAGAATGTTCTTTGATAAAACCATTGACTCCCAACCTAGAAGTTCTTGCGGATCATCAACTTCCTCAACAAATTTGGAGTCCTATCTTAACCAGAATCAATGGGAGTTTAGTTTccaagaaattgaaaattatttgcagGAGTTACTGCCTTTAAATTTGGAGGAAGGAAGTTCTGGGCAAGACAACCAAGTTTCCCACATTAGCCCAATCGAGCCATATGTCGAAGAACGTAACACTTCGGATAACACGAGTGCTGCAGAAAATATTGAGATCCTCAAAGATAAACTGAATGAAGCTTACAGAACCATccaaatgaaaaggaaagaagacGAGGCCAATTGGGAGAGACATGAAAAAGCCGAATGGGCTATTTATATATGCAACCGTCGGGAAGAAGAACTTGAATCTCtaataaagaaagaagtgaCAAGAAAGGAAGAACTAAAGAAGGAACTGGACGCAGAAAAAGAACAACTTCACGAAAATAGAATGGATATTGAAGAGAGCAAGAAAAGGCTTAGTTTAGTGGCAGAGCAGCAATCAGAGCTCCTAAACAGCCTTCATATTAGTACATTGGCAGTGTCACAAGCTGAAACCAAACTAGGGGAGGCATTGACTGAAAAGACAGAGATGCTTAGGGAGATGAATGATCTAAGGAGACAAAGGGATGGACTGAATAGAAGGATTCAgttttatcaaagaaaaagatgCCACAGGAATGAGTGTAGGCTGATAGAGAAGGGTTGTGGTTTAAGGGAGTACACAAAGGAGGAGATCATCTTAGCCACCCACAATTTTTCGGAGCAGATGAGGTTAAAATCTGGTGGGAATTGGACCAATGTGTATAGAGGACAAATTAACTATTCCACTGTTGCAATCAAGAAGCTCATTTCTCTTCCGGAGTTGTCCCAACTAGATTTCCAAGCCAAGGTGGGGTATCTTGGTAGTATTCGGCAACCTCATCTGGTTTCTGTGTTGGGCTTCTGCTCTGAGCCCAAATGCTTAGTTTTGGAATACATGCACAAAGGCAGCTTGGAAGAAATGCTATTTTGTAGGAACAGAAGCCGGGCCTTGAGCTGGCGTGATTGCTTAAGGATAGCCGTTGAAGTTTGTTCAGGGCTGGGCTTTCTAAATGCAGCTCAGCCCAGGCCCATTATTCATTGTGTTCCCTCTCCATCCAAAATCCTCCTAGATTGCAATCTTGTTGCAAAAATCACAGGGTTTGGTCTTCCAGGGTGCAGTGAAGAATGTAATGATAATTCAGATATGAAGGCAATAGGGGTTTTATTGCAAAATCTATTGACTGGAAGAAGAAATTGGGTGACAATGGATACAGAGGCTTTTTTTGATGAGATTGGTGGGCAATGGCCATTGGATGTGGGAAGAGCAGTTGTGGGCTTAGCAATGCGGTGCATGTCCATGAACTGTGAGCCCAATGGAGAAATGAGCATAACAAGAGTCAGGGAGGAACTCAGTGAGATCAGAAGAAAGGGTAATGACATGGTTTCTAGGGAAGGATGGAGGACTATAAATGGTGGAGATGTTGGACAGGACTCCACCCACGTGCCTAGTGTTTTCGTTTGCCCTATCCTTCAGAAGATAATGAAAAATCCACATATAGCAGCAGACGGATTTTCTTATGAGCTAGAAGCAATAGAAGAGTGGCTGCAATCGGGGCATGACATATCACCCAAAAACTTGACGCTGAAGCACAAATTACTTACCCCTAATCATACCCTCCGTTCCCTAATTCAGGACTGGCAAAGAAAGACAGCAGCTAAAGTTGCAAATTAA 2550 0.4114 MVTIVSPPKQITTIGTHGHWCVNIAANAHRLVLASSTTMSPPYVPYRAAWFNKMDATQTEKIYVAVGYDILDGFQTLSWALKKWNSHPCSIVILHVKYNTSKKYVTTLLGKLPAKGACEKNLERSMKYEQRIIEKLLSKYIALCDNVPAETFEVEKFDEPMQKRTIDLIYGLGITKLIMGFSFMKPSLKSEVDINGLFYVHQHKPAFCELFIICEGKQVTPRVKNNEIIMEDDNGVKIASMRDKINFKDWLERMFFDKTIDSQPRSSCGSSTSSTNLESYLNQNQWEFSFQEIENYLQELLPLNLEEGSSGQDNQVSHISPIEPYVEERNTSDNTSAAENIEILKDKLNEAYRTIQMKRKEDEANWERHEKAEWAIYICNRREEELESLIKKEVTRKEELKKELDAEKEQLHENRMDIEESKKRLSLVAEQQSELLNSLHISTLAVSQAETKLGEALTEKTEMLREMNDLRRQRDGLNRRIQFYQRKRCHRNECRLIEKGCGLREYTKEEIILATHNFSEQMRLKSGGNWTNVYRGQINYSTVAIKKLISLPELSQLDFQAKVGYLGSIRQPHLVSVLGFCSEPKCLVLEYMHKGSLEEMLFCRNRSRALSWRDCLRIAVEVCSGLGFLNAAQPRPIIHCVPSPSKILLDCNLVAKITGFGLPGCSEECNDNSDMKAIGVLLQNLLTGRRNWVTMDTEAFFDEIGGQWPLDVGRAVVGLAMRCMSMNCEPNGEMSITRVREELSEIRRKGNDMVSREGWRTINGGDVGQDSTHVPSVFVCPILQKIMKNPHIAADGFSYELEAIEEWLQSGHDISPKNLTLKHKLLTPNHTLRSLIQDWQRKTAAKVAN 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1150 849 SUPERFAMILY Protein kinase-like (PK-like) 503 728 IPR011009 -
Ssu5g1150 849 SMART Ubox_2 777 839 IPR003613 GO:0004842|GO:0016567
Ssu5g1150 849 Coils Coil 453 487 - -
Ssu5g1150 849 Pfam U-box domain 774 842 IPR003613 GO:0004842|GO:0016567
Ssu5g1150 849 Gene3D Phosphorylase Kinase; domain 1 499 591 - -
Ssu5g1150 849 SUPERFAMILY RING/U-box 766 843 - -
Ssu5g1150 849 PANTHER OS02G0152300 PROTEIN 57 844 - -
Ssu5g1150 849 Coils Coil 383 424 - -
Ssu5g1150 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 848 IPR013083 -
Ssu5g1150 849 Gene3D Transferase(Phosphotransferase) domain 1 598 749 - -
Ssu5g1150 849 ProSiteProfiles U-box domain profile. 773 846 IPR003613 GO:0004842|GO:0016567
Ssu5g1150 849 PANTHER U-BOX KINASE FAMILY PROTEIN 57 844 - -
Ssu5g1150 849 ProSiteProfiles Protein kinase domain profile. 519 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1150 849 Pfam Protein tyrosine and serine/threonine kinase 528 664 IPR001245 GO:0004672|GO:0006468
Ssu5g1150 849 CDD RING-Ubox_WDSUB1_like 778 816 - -
Ssu5g1150 849 Coils Coil 334 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1150 Ssu-Chr5 37063404 37083833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1150 56 849 U-box Gene Family AT5G65500 43.243 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu5g1150 PK_Tyr_Ser-Thr 7.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1150 - - gmx:100795815 1354.73