Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1142 ATGGCGGAGCAAAGGAAACGGTGGAGCTGGGACGTCGCCGGCTTCGACCCGTGGAAGTCGTCACCGCTGCCGCCGTCTCCGCACCGCCGTCCGCCGCCGGTGGATCACGGCGATCGGAAACCTAGCGCGCCGTTGGTGCGGCGGTACTCCATTTCGGCCTCGTCGGTTCTTCCACAAACCAAGCACTCTGTGGCCTTCAAGCTTCAGCGGTTGAACGACAAAGTCAAGCTTGCTAGAGAAGACTATTTACAATTAAGACAAGAAGCAAGTGAACTTCAAGAATATTCAAATGCAAAACTTGATCGAGTTACACGATATCTTGGTGTTCTTGCAGAGAAAACCCGCAAGCTAGATCAAGTTGCTCTTGAAACTGAAGCAAGAATATCTCCAGTGATCAATGAGAAAAGAAGATTATTCAATGATTTATTAACATCTAAAGGAAACATACGAGCATTCTGCCGGACAAGGCCATTATTTGAAGATGAAGGTCCTTCAGTTGTTGAATTTCCAGATGACTATACCATTCGTGTAAATACTGGTGATGAATCCTTGTCTAATACCAAGAAAGATTTTGAATTTGACCGAGTTTATGGACCTCATGTTGGTCAAGCTGAGTTATTCAGTGATGTTCAACCACTAGTGCAGTCAGCTTTGGATGGATATAATGTTTCCATATTTGCATATGGACAAACCCATTCTGGAAAGACACACACCATGGAAGGATCAAGCTATGATCGGGGTTTATATGCTCGTTGTTTTGAGGAGTTGTTTGATTTAGCCAATTTAGATACAACCTCTACTTCTCAATATAAATTCTGTGTTACAGTTTGTGAGCTATATAATGAACAGACAAGGGATCTACTTTTGGAGCCAGGGAAAAGCACGCCTAAACTCTGCTTGGGATCACCTGAATGTTTCGTAGAACTGGTGCAGGAAAAAGTTGATAACCCTCTTGAGTTTTCTGCAGTTTTAAAAACTGCATTGCAGACTCGAGAAAATGATTTATTGAAGAATAATGTATCTCATTTGATTGTCACGATACacatattttatgacaatttgaTCACTGGTGAAAACTCATATAGTAAACTCTACCTGGTTGACTTGGCTGGAAGTGAAGGTTTGATAACAGAAGATGATAGTGGTGAGCGTGTCACAGATTTGCTGCATGTTATGAAGTCTCTTTCAGCGTTGGGAGATGTTTTGTCTTCTTTAACATCAAAGAAGAATATTATTCCTTATGAAAATTCAGTGCTAACAAAACTGCTTGCAGATTCACTTGGTGGGAGTTCAAAAACTCTGATGATTGTGAATGTGTGTCcaagtatttcaaatttatctGAGACATTGTCGTCTCTCAATTTCTCTGCTAGAGCTCGAAATTCTATATTAAGCCTTGGAAACCGAGACACAATTAAAAAGTGGAGAGATGTTgcaaATGATGCGCGAAAGGAGctgtatgaaaaagaaaaagaaattcatgATCTAAAGCAAGGGGGTCTGGAACTCCAGCAAGCGCTTAAAGATGCAAATGATCAGTGTGTTCTACTCTTCAATGAAGTGCAGAAGGCATGGAAAGTTTCTTCTGAGTTGCAGACCAATTTAAAGTCGGAGCATGTTTTGCTGTCAGATAAacataagatagagaaagaacaAAATACTCAGCTTAGAAATCAAGTTGCTCAACTTTTACGGTTAGAGCAAGATCAAAAATTGCAGATCCAACAGCAAGATTCAACCATCCAAAGTTTACAGGCTAAAATTAGAACCCTTGAAACTCAACTCAATGAAGCTATTAAATCTAGCGAATCTAGGTCAACATTTGTCTCAGAGCCAGAGTCTGCTGCTCTATCCAATTCCAGACCAACTGGAGATGGCATGGACTCTTCTGCAGTGACCAAAAAACTAGAAGAGGAACTCAAGAAGCGTGATGCTCTAATTGAGAGGTTGcatgaagaaaatgagaaattgtTTGATAGATTAACTCAGAAAGCGTCTGCAGCTGGATCACCTAAGTTGTCAAGTCCATTATCTCGTGGATTGGTTAATGTTCAGCCTCGGGATATTGGAAGGAATGGCACCAGCAACAATACAAGTTCTCGTTCTGTGGATGTTCTTCCTTTACCTTTGGCCACTGATAAAAATGATGGCACAGTTGCTCTAGTTAAAACTGGCTCTGAAATAGTTAAGACTACCCCTGCAGGTGAATATCTCACTGCTGCCTTGAATGACTTTAATCCAGATCAATATGAAGGGCATGCTGCCATTTCTGATGGTGCGAACAAGCTTTTGATGCTGGTTCTGGCTGCTGTCATCAAAGCTGGTGCCTCTAGAGAACATGAGATACTTGCTGAAATTAGGGATgctgttttctcttttattagaAAGATGGAACCAAAACGAGTAATGGACACCATGCTTGTTTCCCGTGTTAGAATTCTGTATATAAGATCTTTGCTTGCAAGATCCCCAGAGTTGCAATCAATTAAGGTTTTGCCAATTGAGTGCTTTCTTGAGAAGGCTAATAATACTGGGCGCAGTAGAAGCTCCAGCCGAGGGAGTAGTCCTGGTAGGTCTCCTGTGCTATATGTTGATGAGCAGATCCAGGGATTTAAAGTGAATCTAAAGCCAGAAAAGAAATCCAAATTTTCATCTGTTGTGTTGAAGATACGTGGGATTGATGAGGACATCTGGAGACAGCAGGTAACTGGTGGAAAGCTTAGGGAAATTACTGAGGAGGCCAAAAGTTTTGCAATTGGGAACAAGGCTCTTGCTGCACTCTTTGTACATACACCTGCGGGTGAGCTGCAGCGCCAAATTAGATCCTGGCTGGCAgagaattttgattttctatctATAACTGGAGATGATGCATCGGGGGGGTCAACTGGTCAGTTGGAACTTCTTTCAACTGCAATTATGGATGGTTGGATGGCCGGACTTGGTGCTGCTCTGCCTCCCCACACTGATGCCCTTGGCCAGCTACTGTTTGAATATTCAAAACGTGTCTATACTTCTCAACTACAGCACTTGAAGACCTTCATTACCTTCCATGGCAAGATATTGCTGGTACCTTGGCGTACTGAGGAGGCTGAAGATGCAGCACAAGTAGCGAAGCTACGTTCAGCTCTAGAGTCAGTTGAtcataaaagaagaaagaTTCTGCAACAAATGAAAAGTGATATAGCTTTATTGACATTAGAAAATGGTGGTTCCCCTATTCAAAATCCTTCTACTGCAGCTGGAGATGCACGATTAGCATCTCTTATTTCGCTTGATAGCATATTAAAGCAAATCAAGGATATAGCAAGACTTTCTTCCGTGAACATCTTGagcaaaagtaagaaaaatatgatGCGTGCTTCTCTTGATGAACTAGCAGAACAGATGCCTTCGCTTCTTGAAATTGATCATCCATGTGCTCAGAGGCACATTGCAGATGCTCGCCACATGGTTGAGTCAATTCCTGAAGAAGATGATCCCATTCAAGATATATCTCATGGTCGCAAGCCATCAACAGATCTGGGCTCTGGATCTGAAACTGATGTGGCACAGTGGAATGTACTCCAATTTAATACTGGCTCCACCTcaccatttataataaaatgtggTGCAAATTCTAATTCAGAATTGGTCATTAAAGCTGATGCACGAGTTCAGGAACCTAAAGGGGGTGAAATTGTGAGGGTTGCCCCTAGACCCTCCGTTTTGGAAAATATGAGCTTGGAGGAAATGAAACAAGTATTTAGTGAACTACCTGAGGCTCTAAGCTTGCTTGCTCTAGCAAGGACTGCAGATGGCACTCGGGCCCGATATTCTAGATTATATAGGACCTTGGCTACGAAGGTTCCATCCCTTAAAGATTTGGTCAGTGAGCTAGAAAAAGGGGGTGTACTCAAAGATGTGAGAACATGA 3915 0.4059 MAEQRKRWSWDVAGFDPWKSSPLPPSPHRRPPPVDHGDRKPSAPLVRRYSISASSVLPQTKHSVAFKLQRLNDKVKLAREDYLQLRQEASELQEYSNAKLDRVTRYLGVLAEKTRKLDQVALETEARISPVINEKRRLFNDLLTSKGNIRAFCRTRPLFEDEGPSVVEFPDDYTIRVNTGDESLSNTKKDFEFDRVYGPHVGQAELFSDVQPLVQSALDGYNVSIFAYGQTHSGKTHTMEGSSYDRGLYARCFEELFDLANLDTTSTSQYKFCVTVCELYNEQTRDLLLEPGKSTPKLCLGSPECFVELVQEKVDNPLEFSAVLKTALQTRENDLLKNNVSHLIVTIHIFYDNLITGENSYSKLYLVDLAGSEGLITEDDSGERVTDLLHVMKSLSALGDVLSSLTSKKNIIPYENSVLTKLLADSLGGSSKTLMIVNVCPSISNLSETLSSLNFSARARNSILSLGNRDTIKKWRDVANDARKELYEKEKEIHDLKQGGLELQQALKDANDQCVLLFNEVQKAWKVSSELQTNLKSEHVLLSDKHKIEKEQNTQLRNQVAQLLRLEQDQKLQIQQQDSTIQSLQAKIRTLETQLNEAIKSSESRSTFVSEPESAALSNSRPTGDGMDSSAVTKKLEEELKKRDALIERLHEENEKLFDRLTQKASAAGSPKLSSPLSRGLVNVQPRDIGRNGTSNNTSSRSVDVLPLPLATDKNDGTVALVKTGSEIVKTTPAGEYLTAALNDFNPDQYEGHAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFSFIRKMEPKRVMDTMLVSRVRILYIRSLLARSPELQSIKVLPIECFLEKANNTGRSRSSSRGSSPGRSPVLYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEDIWRQQVTGGKLREITEEAKSFAIGNKALAALFVHTPAGELQRQIRSWLAENFDFLSITGDDASGGSTGQLELLSTAIMDGWMAGLGAALPPHTDALGQLLFEYSKRVYTSQLQHLKTFITFHGKILLVPWRTEEAEDAAQVAKLRSALESVDHKRRKILQQMKSDIALLTLENGGSPIQNPSTAAGDARLASLISLDSILKQIKDIARLSSVNILSKSKKNMMRASLDELAEQMPSLLEIDHPCAQRHIADARHMVESIPEEDDPIQDISHGRKPSTDLGSGSETDVAQWNVLQFNTGSTSPFIIKCGANSNSELVIKADARVQEPKGGEIVRVAPRPSVLENMSLEEMKQVFSELPEALSLLALARTADGTRARYSRLYRTLATKVPSLKDLVSELEKGGVLKDVRT 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1142 1304 Coils Coil 633 656 - -
Ssu5g1142 1304 MobiDBLite consensus disorder prediction 688 702 - -
Ssu5g1142 1304 Coils Coil 68 95 - -
Ssu5g1142 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 461 IPR027417 -
Ssu5g1142 1304 MobiDBLite consensus disorder prediction 601 630 - -
Ssu5g1142 1304 PANTHER KINESIN-LIKE PROTEIN KIN-14A-RELATED 2 1280 IPR030109 GO:0008017|GO:0009904
Ssu5g1142 1304 SMART kinesin_4 146 466 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g1142 1304 MobiDBLite consensus disorder prediction 667 702 - -
Ssu5g1142 1304 MobiDBLite consensus disorder prediction 1156 1179 - -
Ssu5g1142 1304 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 1280 - -
Ssu5g1142 1304 Coils Coil 472 499 - -
Ssu5g1142 1304 MobiDBLite consensus disorder prediction 601 627 - -
Ssu5g1142 1304 ProSitePatterns Kinesin motor domain signature. 362 373 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu5g1142 1304 Pfam Kinesin motor domain 154 461 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g1142 1304 Coils Coil 546 566 - -
Ssu5g1142 1304 MobiDBLite consensus disorder prediction 14 42 - -
Ssu5g1142 1304 Gene3D Kinesin motor domain 93 462 IPR036961 -
Ssu5g1142 1304 PRINTS Kinesin heavy chain signature 412 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g1142 1304 PRINTS Kinesin heavy chain signature 220 241 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g1142 1304 PRINTS Kinesin heavy chain signature 363 381 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g1142 1304 MobiDBLite consensus disorder prediction 667 681 - -
Ssu5g1142 1304 ProSiteProfiles Kinesin motor domain profile. 148 462 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu5g1142 1304 Coils Coil 574 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1142 Ssu-Chr5 36860362 36878876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1142 135 463 Calmodulin-binding Proteins AT5G65930 36.950 5.15e-50 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1142 - - gmx:100796816 2256.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1864 2 70288902 70318046 Ssu5g1142 5 36860362 36878876 PCT