Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1136 ATGGAAGAGAGCATTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACAATGACACTTGCTTTGATGAGTTTGAATGTAATGTTGCAGATGGGTCTCCTTCCTGGGACCACAAAAATCTTAACTTTAACAATCAATGTCTGATTAAGGACAATCATGGATCGAAACATTTCTTGGATTTTCTTGTACAGAGTGATGAAACTGTTCTGGGTTTGATTGGGAAGGAGAGGGAACATTTGCCCCGGGATGATTACCTGAAGAGGCTGCTTAGTGGGGACTTGGACTTGAGTGTTAGGAGGGAGGCTCTTGATTGGATTTGGAAGGCTCATGCATACTATGGTTTTGGACCCTGTAGCTTTTGTCTATCTGTGAACTACTTGGATCGGTTCCTATCGGTATATGAATTACCAAGAGGCAAAAGTTGGAGTGTACAACTGTTAGCTATAGCATGTTTGTCAATTGCTGCTAAAATGGATGAGACTAAAGTGCCTCCTTGTGTAGATTTACAGGTTGGAGAACCTAAGTTTGTATTTGAAGCTAAAACCATTCAAAGAATGGAACTACTGGTACTAGGCACATTGAGATGGAAAATGCAAGCTTTAACTCCATGTTCCTTCCTAGACTACTTCCTCAAGAAGATCACTTGTGACCAACTTCTAGTAAACTCATCCATTTTGAGATCAGTAGGGCTCATCCTTAACATGATTAGATGTATCAATTTCTTGGAATTCAGGCCTTCTGAAATTGCCGCAGCAGTGGCAATTTCTGTATTGAGGGAATTGCAAGCAGAAGAAATTGAGAAGGCCTTGACATGTTTTGTCATTGTAGAGAAGGGAAGAATTTTGAAGTGTCTTGAGTTGATTAAAGATTTGTCCTTGATTCAAGATTCTGCTAATTTGGGCAGCAACTTAGCACCATTTGTACCCCAAAGCCCTATTGGTGTGCTGGATGCTGCATGCTTAAGCTCTATAAGTGATGAATTAACAGTTGGATCATGTACAGATTCTTCCTTTGATACTTCAAAttctaagaggagaaaataTGACTGA 1050 0.399 MEESIDPATSSLLCLENNDTCFDEFECNVADGSPSWDHKNLNFNNQCLIKDNHGSKHFLDFLVQSDETVLGLIGKEREHLPRDDYLKRLLSGDLDLSVRREALDWIWKAHAYYGFGPCSFCLSVNYLDRFLSVYELPRGKSWSVQLLAIACLSIAAKMDETKVPPCVDLQVGEPKFVFEAKTIQRMELLVLGTLRWKMQALTPCSFLDYFLKKITCDQLLVNSSILRSVGLILNMIRCINFLEFRPSEIAAAVAISVLRELQAEEIEKALTCFVIVEKGRILKCLELIKDLSLIQDSANLGSNLAPFVPQSPIGVLDAACLSSISDELTVGSCTDSSFDTSNSKRRKYD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1136 349 Pfam Cyclin, C-terminal domain 202 292 IPR004367 -
Ssu5g1136 349 PANTHER CYCLINS 60 347 IPR039361 -
Ssu5g1136 349 SMART cyclin_7 104 192 IPR013763 -
Ssu5g1136 349 SUPERFAMILY Cyclin-like 58 198 IPR036915 -
Ssu5g1136 349 Pfam Cyclin, N-terminal domain 73 198 IPR006671 -
Ssu5g1136 349 SMART Cyclin_C_2 201 324 IPR004367 -
Ssu5g1136 349 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Ssu5g1136 349 SUPERFAMILY Cyclin-like 183 291 IPR036915 -
Ssu5g1136 349 CDD CYCLIN 99 191 IPR013763 -
Ssu5g1136 349 PANTHER CYCLIN-D4-1-LIKE 60 347 - -
Ssu5g1136 349 Gene3D - 82 199 - -
Ssu5g1136 349 Gene3D - 72 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1136 Ssu-Chr5 36794432 36796446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1136 64 262 Core Cell Cycle Gene Families AT5G65420 60.697 9.04e-87 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1136 K18810 - gmx:100800570 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1847 2 70049533 70051517 Ssu5g1136 5 36794432 36796446 PCT