Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1134 ATGGAATTCGAGGAGCAAGGGGAAGCCGAGCTGGGAATGCCCCCGGCGAGTTACGACGACTCGGCGTTCAACCAGTGCCGAGTGAAAATACCGAGTCACGGCGAAGAAGACCCCGCGGCAGTGCCAGTGACCCGAAACAGCGGCAAGGGAAAGTACAAAGAGTGCCTCAAGAACCACGCGGTGGGGATCGGCGGCCACGCGCTCGACGGCTGCTGCGAGTTCATGGCGGTGGGCGCGGAGGGCACCCTCGACGCCCTCAAGTGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACCGGCGAGAGCCCCTTCCTGTTGCCGTTCCACCACCGCCGCCACCCTCCGCCGCAGTTCGCGGCGTGCTACCGCGCGCCGGCGGGGTACCTGCACGTGGCGGGGCAGCAGCGAGGAGGGGTTGCCACGCTGGCGCTCCCGTCCACGTCAGGTGCTGGCGGTGGGACCCAGAGCCCGAGGGAGGACCAGGAGGATGTTTCGGACCCAAGTGGCGGTGGCGGGTCCAAGAAGAGGTTCAGGACCAAGTTCACGCAGGAACAGAAGGACAAGATGCTCGCTTTCGCCGAGAAATTGGGTTGGAGGATTCAGAAGCACGACGAGAGCGTCGTGCAGGAGTTCTGTTCCCAAACTGGCGTCCAGCGCCACGTCCTTAAGGTTTGGATGCATAACAACAAACACACCCTTGGTAAGAAGCCCtag 723 0.6362 MEFEEQGEAELGMPPASYDDSAFNQCRVKIPSHGEEDPAAVPVTRNSGKGKYKECLKNHAVGIGGHALDGCCEFMAVGAEGTLDALKCAACNCHRNFHRKETGESPFLLPFHHRRHPPPQFAACYRAPAGYLHVAGQQRGGVATLALPSTSGAGGGTQSPREDQEDVSDPSGGGGSKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDESVVQEFCSQTGVQRHVLKVWMHNNKHTLGKKP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1134 240 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g1134 240 Pfam ZF-HD protein dimerisation region 51 102 IPR006456 -
Ssu5g1134 240 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 177 233 IPR006455 -
Ssu5g1134 240 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 52 101 IPR006456 -
Ssu5g1134 240 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 239 - -
Ssu5g1134 240 Gene3D - 162 238 - -
Ssu5g1134 240 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 39 239 - -
Ssu5g1134 240 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 51 101 IPR006456 -
Ssu5g1134 240 MobiDBLite consensus disorder prediction 145 182 - -
Ssu5g1134 240 SUPERFAMILY Homeodomain-like 166 238 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1134 Ssu-Chr5 36645641 36646363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1134 48 236 ZF-HD Transcription Factor Family AT4G24660 57.292 1.86e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu5g1134 ZF-HD_dimer 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1134 - - gmx:100798992 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1134 5 36645641 36646363 Ssu5g1134 5 36645641 36646363 PCT