Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1130 ATGGAAGAGGCACTCCGTCGTCTCAACGGAATGCCCCCGATTCAAGAACCCGACGTCATCTCCGACCACCACCCCAAGAAGTGCGCCACCAAGCGGTCGCTGCGCGAAACCAGCCACTCCGGCACCGCCATGAGGTACCGCGGCGTCCGGCGCCGCCCGTGGGGCCGCTACGCTGCCGAGATCAGGGACCCGCAGTCGAAGGAGCGCCGCTGGCTCGGCACCTTCGACACGGCGGAGGAGGCCGCCTGCGCCTACGACTGCGCCGCCCGAGCCATGCGCGGCGCCAAGGCCCGGACCAACTTCGTTTACCCGGACGCCGCCGACCCGCACCTCTTCCAACCCTTCAGCATCCCGAAGCAGTGCCACGTCAGCAGGTTCGCCCACAACCCCAATTTGGTCGGGGACTTCTCCGTAAACGGCGCCGTTTCCGCATCTTCCGCCCAGCACAACAACAACGCTTCTTCCCTCAACATGCTTCTCTTTCGCGACTTCCTCAACTCTTCTTCTCAGCAGCTTCACCGCAAGGCTGCTAGTGGTTCTTTCAACTCTTCgtctttatcttcttcttctgtGTTTTCCTGTCTCCAAGGTTGCTGTGTTGGGAACGTTAACAATGCCAGTGTTGGTGTTGTCAGTGCTAATCACGGAACGGAAGTGGCCGTGGCTATCGATGAAGATTCCGAGTTTTTCCCGCGGGAGTCTTCGGATTCTGGGTTGTTGGAAGAGATAGTGCATAAGTTCTTGCCGAAATCGAAGCCCACGAAAAAGGAGGCTCTGTCCGTTCCTGAGTCGCTTCCTCAACCAGTGTATGATCACATGGTCGTTTCTGCCGCTAAGACGAGGGTCCCCAACATCGAAGGTTTTGGTGTGTCTTATGATTCTCCCATGCAGCAGTTTGAAGCTCTTAATGGGTTTAACACCATGCAGGGTATGTCTATTGAGAGAGACGGCCAGTTTATGATGAATCATTTTCCAGGCTGCTCCAACTTGGAAGATATTCTTCAGTATCCagaactttttaatttctttgccAGCCAGGATGCAAAATGCTTAACTTAA 1059 0.5411 MEEALRRLNGMPPIQEPDVISDHHPKKCATKRSLRETSHSGTAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDAADPHLFQPFSIPKQCHVSRFAHNPNLVGDFSVNGAVSASSAQHNNNASSLNMLLFRDFLNSSSQQLHRKAASGSFNSSSLSSSSVFSCLQGCCVGNVNNASVGVVSANHGTEVAVAIDEDSEFFPRESSDSGLLEEIVHKFLPKSKPTKKEALSVPESLPQPVYDHMVVSAAKTRVPNIEGFGVSYDSPMQQFEALNGFNTMQGMSIERDGQFMMNHFPGCSNLEDILQYPELFNFFASQDAKCLT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1130 352 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 345 - -
Ssu5g1130 352 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Ssu5g1130 352 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Ssu5g1130 352 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Ssu5g1130 352 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Ssu5g1130 352 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Ssu5g1130 352 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Ssu5g1130 352 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 345 - -
Ssu5g1130 352 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g1130 352 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Ssu5g1130 352 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1130 Ssu-Chr5 36261029 36262087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1130 43 319 AP2-EREBP Transcription Factor Family AT1G24590 38.591 1.49e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu5g1130 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1130 - - aprc:113860142 415.231