Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1128 ATGGTGGGTCCCTCTTCCTCCCACGCGCACAATTCCACCCCCAAATTCCTCTGCAGCTACGGCGGCAAAATCCTCCCCCGTTATCCAGACGGCAAGCTCCGTTACCTCGGCGGCCACACCCGCGTCCTCGCCCTCCCTCGCTCCACCCCCTTTTCCGAGGTTATGGTGAAGATGGGAGAGCTATGCGGCGCACACGTCACCCACCTCCATTGCCAATTACCGACCGAAGACCTCGACGCTTTGGTTTCCATCACCTCTGACGAGGACCTCGCTAACCTCGTCGAGGAATACGACCGCGTTTCGTCTTTAAAGATCAGAGCCTTTCTTTCCCCTTCGGCTTCGCCCACTCTGTCAAAaacgtcgtcgtcgtcgtcttGTTTCTCTTCTTCGTCGTCTACGTCTTCCAGGTTGTCGTTTTGCTGCGCTACCGTTACGGCGCCGCAGCCGGTGATGGTGCGTCAGGTGTCGCTGGCTACGGCCGTGAAGAAGTCTCATGTTTCTCCTCGCTGCTATGGTTATCCCCGCGTTCAGGGGAATCGTGGTGTCGTTTACCTCGTCCCCAACGGCAACCACTGGCCCTGGCGCTGCTGTCGTTTGAGTCTGAAACAATTGGATGATTGA 621 0.5572 MVGPSSSHAHNSTPKFLCSYGGKILPRYPDGKLRYLGGHTRVLALPRSTPFSEVMVKMGELCGAHVTHLHCQLPTEDLDALVSITSDEDLANLVEEYDRVSSLKIRAFLSPSASPTLSKTSSSSSCFSSSSSTSSRLSFCCATVTAPQPVMVRQVSLATAVKKSHVSPRCYGYPRVQGNRGVVYLVPNGNHWPWRCCRLSLKQLDD 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1128 206 SUPERFAMILY CAD & PB1 domains 30 118 - -
Ssu5g1128 206 Gene3D - 32 111 - -
Ssu5g1128 206 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 6 188 - -
Ssu5g1128 206 PANTHER OS05G0427100 PROTEIN-RELATED 6 188 - -
Ssu5g1128 206 SMART PB1_new 28 112 IPR000270 GO:0005515
Ssu5g1128 206 Pfam PB1 domain 30 111 IPR000270 GO:0005515
Ssu5g1128 206 CDD PB1_UP2 17 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1128 Ssu-Chr5 36109716 36110423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1128 15 109 MAP Kinase Kinase Kinase AT2G35050 51.020 1.70e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1128 - - aprc:113859578 231.876