Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1112 ATGGCTTCTTTCACTCagcttctttctcttcttttccctttGCTGGCAACTTCTCTTGTTGGAGATTTTGCCTTTGAAGTCTCAATCAAAACAACTTATTTGGCTCCTTTAAATTGCTCTGCTAAGATCAGGACATGCAATGCCTCACTCTACCACATAACCCAAAATCTCACGACTGAACAAATTGCCTCTTTTTACTCGGTTATTTCTTCCCAAATCACACCTATAATGCATGGCACCAAACAAGACTACCTCATCTCGGTACCTTGTTCATGCAGAAACACCAGTGACTACCTTGGCGGATATTTCTATGACACAACCTACAAAGTGAGGCCAAATGACGCTTTTGTGAATATTTCAAACCTGATTTTCAGTGGGCAAGCTTGGCCAGTTAATGTTGGTGATACATTGCATCCAGATGATAATTTAACAATACATATTCCATGTGGGTGCTCAGAAAGTGACTCTCAAATAGTTATTACCTATACAGTCCAGCAGCATGATACAACAACAATGATTGCAAAGCTGCTAAATGCTACACTGGCTGGCATGCTGAGCATGAACAAGGTTCTGGCTCCGAACCCTGAATTTATAGATGTTGGTTGGGTGCTATTTGTTCCCAAGGAAATGAAGGAATCCAAAGGGCTTCTACCTAGTGCTGACAAAGAAGAAAAGAAACATAAGTGGACAACAACAATCATTGGCATCTTAGCGGGCGTGACATTACTTTCAATTACTACAAcgatcattctcattctcaggAGAAACAAAGTCAATCAAATCACCAGAGAAGATTCACGCCTTATCTCTAGAAGATCAATCGCCAATAGAACTATTTCCTCAAAGTATAGCCTTCGTAATGATTATATAGAAGACGTAATTTCATTTGAATCAGAAAGACCAGTAATATATAACCTTGAGGAGATTGAAGAGGCTACAAATAACTTTGATGAAACTCGAAGAATAGGAAGTGGTGGATATGGAAGTgtttattttggaattttagGGAACAAGGAGGTTGCTGTGAAGAAGATGGGGTCTAATAAATCTGAAGAGTTCTGTGCAGAACTCAAAGTCTTGTGTAGGATCCACCATATCAACATTGTAGAGCTATTGGGATATGCCAACGGAGAAGATGACCTCTATTTGGTGTATGAGTACGTTCCAAATAGATCTCTTAGTGATCATCTTCATGATCCATTACTGAAAGGCAACCAACCTCTCTCTTGGAGTGCTAGGGTTCAAATTGCCCTGGATGTTGCAAAAGGTCTTGAATATATACATGATTATACAAAGGCACAATATGTGCACCGTGATATAAAGACTAGCAATATTCTACTTGACAACAAGCTCAGAGCGAAGGTGGGAGATTTTGGACTTGCAAAGCTGGTAGATCGAaccaatgataaaaaatttatagcaaCTAGGCTTGTAGGGACACCAGGCTACCTTCCACCAGAaTCTTTGAAGGAGTTTCAAGTGACTCCAAAAATTGATGTGTTTGCGTTTGGAGTGGTACTTTCAGAGCTGTTAACAGGGAAACGTGCACTATTTCACGAAAGCCAAGAAGACATCAAAATGAAATCACTTGTTACTGTTGTTAATAAAATATTCCAAGATGATGACCCAGATACTGCTTTAGAAGATGCCATAGATAAGAATCTTGAAGCTAGCTATCTGATGGAGGATGTCTACAAGATGGCAGCAATAGCTGAGTGGTGCTTGCAAGAAGATCCAATGGAAAGGCCAGAAATGAGGGATATAATTGGAGCATTGTCACATATTATGATGTCCTGGACAGAGTGGGAAGCATCCCTATGTGAAAACAGCGAGGTCTTCAGTGGGCTGTATAGTGGAAGATGA 1863 0.3859 MASFTQLLSLLFPLLATSLVGDFAFEVSIKTTYLAPLNCSAKIRTCNASLYHITQNLTTEQIASFYSVISSQITPIMHGTKQDYLISVPCSCRNTSDYLGGYFYDTTYKVRPNDAFVNISNLIFSGQAWPVNVGDTLHPDDNLTIHIPCGCSESDSQIVITYTVQQHDTTTMIAKLLNATLAGMLSMNKVLAPNPEFIDVGWVLFVPKEMKESKGLLPSADKEEKKHKWTTTIIGILAGVTLLSITTTIILILRRNKVNQITREDSRLISRRSIANRTISSKYSLRNDYIEDVISFESERPVIYNLEEIEEATNNFDETRRIGSGGYGSVYFGILGNKEVAVKKMGSNKSEEFCAELKVLCRIHHINIVELLGYANGEDDLYLVYEYVPNRSLSDHLHDPLLKGNQPLSWSARVQIALDVAKGLEYIHDYTKAQYVHRDIKTSNILLDNKLRAKVGDFGLAKLVDRTNDKKFIATRLVGTPGYLPPESLKEFQVTPKIDVFAFGVVLSELLTGKRALFHESQEDIKMKSLVTVVNKIFQDDDPDTALEDAIDKNLEASYLMEDVYKMAAIAEWCLQEDPMERPEMRDIIGALSHIMMSWTEWEASLCENSEVFSGLYSGR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1112 620 Gene3D LysM domain 151 215 IPR036779 -
Ssu5g1112 620 ProSiteProfiles Protein kinase domain profile. 316 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1112 620 SMART serkin_6 316 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1112 620 Gene3D Transferase(Phosphotransferase) domain 1 388 611 - -
Ssu5g1112 620 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 18 620 - -
Ssu5g1112 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Ssu5g1112 620 Gene3D Phosphorylase Kinase; domain 1 295 387 - -
Ssu5g1112 620 Pfam Protein kinase domain 317 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1112 620 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Ssu5g1112 620 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 18 620 IPR044812 GO:0019199|GO:0045087
Ssu5g1112 620 SUPERFAMILY Protein kinase-like (PK-like) 299 592 IPR011009 -
Ssu5g1112 620 SUPERFAMILY LysM domain 160 207 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1112 Ssu-Chr5 35573672 35589742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1112 296 620 Receptor kinase-like Gene Family AT1G51940 49.245 2.13e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu5g1112 Pkinase 9.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1112 - - gmx:100791718 1001.89