Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1105 ATGGATCTGGAACTCCCTGCTGCAGCTGCCAATGAATCTCCACAACAAAAGTTTGCTCTACCTGTGGATTCTGAAAACAAGGCCACTGTGTTCAGATTGTTTTCCATAGCCAAGCCCCACATGAGGGCTTTTCACCTATCATGGGTCTCTTTCTTCTCATGCTTTGTGTCTAGCTTTGCTGCACCACCCCTCCTTCCCATAATCCGCGACAACCTGAACCTCACAGCCACGGACATAGGAAATGCCGGGGTGGCATCAGTTTCAGGTGCTGTTTTTGCGAGAATTGCAATGGGAACAGCTTGTGACTTGGTCGGACCGCGCCTCGCCTCTGCATCACTCATTCTTCTGACAGCACCATTCGTGTACTTCACTTCCATCATCAACTCGGCCACCTCTTACCTCCTCGTCCGTTTCTTCACCGGCTTCTCCCTGGCCACCTTTGTGTCCACGCAGTTCTGGATGAGCTCCATGTTTTCGGCCCCGGTGGTCGGTTCGGCCAACGGATTAGCCGGCGGATGGGGCAACCTCGGAGGAGGAGCCACCCAACTCATCATGCCCCTTGTGTTTTCCCTCATTCGCGACATTGGTGCCGCGCAATTCACCGCGTGGAGGATTGCATTCTTTGTCCCTGCCATGTTCCAAATGCTCACAGCATTTTCAATACTCATGTTTGGCCAAGACATGCCTGATGGGAACTTCCACCGCTTGAAGAAGTCAGGGGACAAACCAAAAGATGGGTTCTCAAGAGTGCTGTATCATGGGGTTACTAACTACAGGGGCTGGATTCTGGCGTTGACTTATGGCTACTGCTTTGGGGTGGAGTTGACCATGGACAACATCGTAGCTGAGTACTTCTATGACAGGTTTAATCTGAAACTCCGCACTGCTGGAATCATTGCTGCAAGCTTTGGCTTGGCTAACATATTTTCTAGACCAGGTGGGGGTTATATATCTGATGTAATGGCGAAGAGGTTTGGCATGAGGGGCAGATTGTGGGCCTTGTGGCTGTGCCAAACCTTGGCTGGTGTATTCTGCATCGTCCTTGGCCTGGTGGGGTCTTTAAGTGTATCCATCGTTGTTATGATCATATTCTCTGTGTTTGTCCAAGCCGCATGTGGAATGACCTTTGGGATTGTTCCGTTTGTCTCAAGAAGGTCATTAGGCGTCATATCTGGAATGACAGGAGGAGGAGGCAATGTGGGTGCAGTTGTGACCCAGCTAATTTTCTTCAAAGGATCCAGGTTTTCAAAAGAAAGGGGAATAACTCTAATGGGAGTCATGATCATAATATGCACCCTGCCAATATGCTTAATCTACTTTCCGCAATGGGGTGGGATGTTTTTTGGTCCCTCATCTAAAAAGGTCACAGAAGAAGATTACTACTTGGCTGAGTGGAACtcaaaggagaaggagaaaggCTCCCACCATGCAAGCTTGAAGTTTGCAGATAACAGCAGAAGTGAAAGAGGCAGAAAACTGAATACATCAACCGAGCCTACTGAGGAAATCACACCCCCACATATTTGA 1527 0.4853 MDLELPAAAANESPQQKFALPVDSENKATVFRLFSIAKPHMRAFHLSWVSFFSCFVSSFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLVGPRLASASLILLTAPFVYFTSIINSATSYLLVRFFTGFSLATFVSTQFWMSSMFSAPVVGSANGLAGGWGNLGGGATQLIMPLVFSLIRDIGAAQFTAWRIAFFVPAMFQMLTAFSILMFGQDMPDGNFHRLKKSGDKPKDGFSRVLYHGVTNYRGWILALTYGYCFGVELTMDNIVAEYFYDRFNLKLRTAGIIAASFGLANIFSRPGGGYISDVMAKRFGMRGRLWALWLCQTLAGVFCIVLGLVGSLSVSIVVMIIFSVFVQAACGMTFGIVPFVSRRSLGVISGMTGGGGNVGAVVTQLIFFKGSRFSKERGITLMGVMIIICTLPICLIYFPQWGGMFFGPSSKKVTEEDYYLAEWNSKEKEKGSHHASLKFADNSRSERGRKLNTSTEPTEEITPPHI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1105 508 MobiDBLite consensus disorder prediction 468 496 - -
Ssu5g1105 508 Pfam Major Facilitator Superfamily 49 404 IPR011701 GO:0022857|GO:0055085
Ssu5g1105 508 SUPERFAMILY MFS general substrate transporter 37 439 IPR036259 -
Ssu5g1105 508 Gene3D MFS general substrate transporter like domains 35 232 IPR036259 -
Ssu5g1105 508 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 8 494 IPR044772 GO:0015112
Ssu5g1105 508 CDD MFS_NRT2_like 44 437 IPR044772 GO:0015112
Ssu5g1105 508 Gene3D MFS general substrate transporter like domains 249 444 IPR036259 -
Ssu5g1105 508 PANTHER HIGH AFFINITY NITRATE TRANSPORTER-RELATED 8 494 - -
Ssu5g1105 508 MobiDBLite consensus disorder prediction 468 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1105 Ssu-Chr5 35298622 35301201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1105 16 499 Inorganic Solute Cotransporters AT1G12940 74.793 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1105 K02575 - gmx:100787888 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1105 5 35298622 35301201 Ssu5g1105 5 35298622 35301201 ECH