Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1104 ATGCCGTCTTCTTCTTCCGCCTCCTTCATGTTTCTCTTCCTCTGTCTCTTCGCAACTCGTGCACTTTCCGACCCTAGAGCCCAGAGAGCCGCTCTGCTATGCACCAACCGAACCGTTTCCTCCCTTTCTCGCCGCCAAGTCTTCGTCGCAAACTTCCTGGCCGCCATGGACGCGTTGACCCCTCTCACCACGACGCAGCGCCGCGGCGCCGTCGTTAACGGCTCCCAAAACGCCACCGTCTACGCCTTGGGCGAGTGCATGAGGGACCTCTCCCAGTCCGACTGCAACGTGTGCCTCGCGCAGTGCAAGACGCAGCTCCTCAGCTGCCTCCCGTTCCAGAAGGGGACACGTGGCGGCAGGCTCTTCTTCGACGGGTGCTACCTCCGTTACGACGACTACAACTTCTTCAACGAGAGCCTCAGCGACCGGGACACCGCCGTGTGCGGTTCCGGTGCGACTAATAGTGGCGGTGTCTATAAGGCCAACGCGCTGGAGTTGGTTAGGAACCTGAGCGAGTTGGCGCCAAAAAACGACGGGTTCTTCGTGGGGTCGGTCGAGAGAAAGAACGCGAGTGTTTACGGGTTGGCTCAGTGCTGGGAGTTTGTGAATGGCGGCGCGTGCCGGAAATGTTTGGCTGACGCTGTTACTAGGATCGCTTCGTGCGAAACGGAAGAAGGGAGAGCGTTGAATGCTGGTTGTTACTTGAGGTATTCTGCGCAAAAGTTTTATAACAATTCAACCGATGTTGCACCAGCTGGAAATCACGGAAGCCGGAGTCTAGCTAAAATTCTGGCTGTAAGTTCTGCTGCCCTGGCTCTTCTGCTGGTTGCTGCAACAGTTGTTTTCTTTCTAAGGAAGAATGTAGTGACAAAGAGAAGAGAAAGAAGACAGTTTGGTGCAATTCTGGACACAGTGAATAAGTCCAAGCTAAATGTGCCATATGAGATTCTTGAAAAGGCAACAAATTACTTCAATGACGCCAATAAGCTAGGACAAGGGGGATCGGGTTCAGTTTATAAAGGAGTTATGCCAGATGGAATCACCGTTGCCATAAAAAGGCTTAGCTTTAACACAACACAATGGGCAGATCATTTCTTCAATGAGGTCAATTTGATCAGTGGCATTCATCACAAAAATCTAGTAAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATACGTGCCTAACCAGAGCCTCTACGATCACCTTTCTGGTTGTAACTTTATATCTGATATCCAGTCTTAA 1263 0.5123 MPSSSSASFMFLFLCLFATRALSDPRAQRAALLCTNRTVSSLSRRQVFVANFLAAMDALTPLTTTQRRGAVVNGSQNATVYALGECMRDLSQSDCNVCLAQCKTQLLSCLPFQKGTRGGRLFFDGCYLRYDDYNFFNESLSDRDTAVCGSGATNSGGVYKANALELVRNLSELAPKNDGFFVGSVERKNASVYGLAQCWEFVNGGACRKCLADAVTRIASCETEEGRALNAGCYLRYSAQKFYNNSTDVAPAGNHGSRSLAKILAVSSAALALLLVAATVVFFLRKNVVTKRRERRQFGAILDTVNKSKLNVPYEILEKATNYFNDANKLGQGGSGSVYKGVMPDGITVAIKRLSFNTTQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLYDHLSGCNFISDIQS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1104 420 Pfam Salt stress response/antifungal 34 133 IPR002902 -
Ssu5g1104 420 Pfam Salt stress response/antifungal 152 239 IPR002902 -
Ssu5g1104 420 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 18 414 - -
Ssu5g1104 420 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 414 - -
Ssu5g1104 420 ProSiteProfiles Gnk2-homologous domain profile. 141 242 IPR002902 -
Ssu5g1104 420 ProSiteProfiles Gnk2-homologous domain profile. 27 135 IPR002902 -
Ssu5g1104 420 Pfam Protein kinase domain 325 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1104 420 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Ssu5g1104 420 ProSiteProfiles Protein kinase domain profile. 324 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1104 420 Gene3D - 28 135 IPR038408 -
Ssu5g1104 420 Gene3D - 143 242 IPR038408 -
Ssu5g1104 420 SUPERFAMILY Protein kinase-like (PK-like) 303 414 IPR011009 -
Ssu5g1104 420 Gene3D Phosphorylase Kinase; domain 1 285 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1104 Ssu-Chr5 35271666 35273685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1104 21 409 Receptor kinase-like Gene Family AT1G70530 56.633 6.47e-160 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g1104 Stress-antifung 5.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1104 - - gmx:100787359 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1104 5 35271666 35273685 Ssu5g1104 5 35271666 35273685 ECH
Ssu5g1104 5 35271666 35273685 Ssu6g1391 6 22840289 22843955 ECH