Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1103 ATGGCTCCGGAGTATGTTGTTTGTGGGAAGTTGACTGAGAAAGCAGATGTTTACAGTTTTGGAGTTTTAGTTATTGAAATTGTATCTGGCAAAAGAAACAGTTCCTTTGTTATGAATTCATCCTCTCTCGTACAGACGGTCTGGAGCCTCTATGGATCAAATAGGCTATCTGAAATTGTTGATCCGACCCTAGAGGGTGCTTTTCCTGCAGAGGAAGCATGCCAACTGCTTCAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGttgttaaaatgattaataacgATCACGAAATTCCTCAGCCAACACAACCGCCATTTATTAATTCTGGTAGTTCAGAATTCAACAAATCTGGTTTACCCGGATATAAATTGCAGCCTGGATCCAACACTCAGTCTTCAGGGGACACCATGACTGAAAATACCAATAGGGTATTTAGTCTCTGGCTTTCGACTAAAGGATACCTTGAGTTTACTAACAGGGTATTTGGGAATATATCTTCCAGAAAGCTCTCTACTACTAAAACCAATCACACACTAAATATGTTAAGTGCACTATTGATTTTGGTCAAATATTCTTCCACGGTAAACGTCCCTCTTGTCTATTTCCAATGCCTTGTTTTCCTTCTCATGAAGCATGTATTGCTATCAAAAACAGTGATGGCAGAACCACGGGCCAGGACTTTCAATATAACATGCAACCATAAGCTAGAGCACAACCCCACTATCtttgttcaaaattttgttgCAACAATGGAGAAGATCAGTGAACAGATGCGCAACAATGGTTATGGCATAGCAGTTGTAGGAACAGGACCTGACACTAACTACGGGTTGGCTCAGTGCTATGGTGATCTCTCATTACTTGACTGTGTGTTATGCTATGCCGAGGCACGCACGGTTCTTCCCCAATGCTTCCCTTACAATGGTGGTCGCATATACCTTGATGGTTGCTTCATGAGGGCTGAAAACTATAGCTTCTATAATGAGTACACAGGACCAGAAGACAAGGCCGTTTGTGGAAACACAACAAAGAAGAACACAAGTTTTCAAGCAGCAGCAAAGAAGGCTGTTTTGAGTGCAGTTCAAGCTGCACCAAACAATAAAGGGTATGCTAGGGAGGAGGTTGCTGTGGCAGGAACAACAAATGATTCAGCTTATGTTCTGGCTAATTGTTGGAGGAACTTGGACACAAAGTCTTGTAGAGCTTGTCTTGAGAATGCATACTCTTCCATATTGGGGTGCTTGCCCTGGTCAGAAGGGCGAGCACTGAACACTGGATGCTTCGTGTGGTACTCAGACAGAGATTTTCTTAACAAGGAACTGGAAAATGGAAGTTCAGGAGGTAATGTATTAGTGATAGTGATTTCAGTAGTCAGTTCAGTGATTGTTTTGGTGCTTGGGATAGCTGTTGGGGTTTATATCCGCAAACACagatatattcaaaagaaacgAAGAGGTTCAAATGATGCAGAAAAGTTAGCTAAGAGCCTTCACAACAATAGCTTGAACTTCAAGTACTCTACACTGGAGAAGGCTACTAACTCTTTTGATGAAGCTAACAAGCTTGGACAAGGAGGATTTGGAACAGTTTATAAGGGAGTTCTGCCTGATGGAAGAGAGATTGCTATCAAGAGATTATATTTCAACAACAGACATAAAGCAGCAGATTTCTACAACGAAGTCAACATAATTAGTAGTGTGGAACACAAAAATCTAGTCAGACTTTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTACTTATATATGAATATCTACCTAACAAAAGTCTTGATCGCTTCATATTTGATAAAAACAAGGGTAGAGAACTAAACTGGGACAAGAGATGTCACATTATCATCGGGACAGCTGAAGGACTGGTTTACCTGCATGAGAACTCCAAAATTAGGATAATCCACAGAGATATAAAATCCAGCAACATCTTATTGGATGTAAAACTTCGCGCTAAAATTGCTGATTTTGGTTTAGCCAGGTCCTTTCAAGAAGATAAGAGCCACATTAGTACAGCTATTGCTGGAACTTTGGGTTATATGGCTCCAGAGTACTTAGCACATGGTCAGTTAACAGAGAAAGCAGACGTATATGGCTTTGGAGTGTTACTGCTAGAAATAATTACTGGGAGACAGAATAACAGGAGCAAAGCATTAGAATATTCAGACAGCCTAGTTATAACGACATGGAAGCATTTTCAGTCAGGGACTGCAGAACAATTAATTGATCCAAATCTAGTGTTGGACGACAACTACAGAAGCAATGTTAAGAATGAGATTTTAAGAGTGGCGCACATAGGACTCCTATGTACCCAAGAAATCCCTTCCCTACGACCATCTATGTCAAAGGCACTAAAGATGCTAACAAAGAAGGAGGAGCACTTGGAAGCTCCCTCCAATCCACCCTTTATAGATGAAAGTACCATGGAACTCCATGACCAAAATGATGACCCATTTTACCCTCTCAATGCAGCAGACTCATTGGCTACTATGTCTCATAGCTCATTTTATCCCAGGTAA 2556 0.4053 MAPEYVVCGKLTEKADVYSFGVLVIEIVSGKRNSSFVMNSSSLVQTVWSLYGSNRLSEIVDPTLEGAFPAEEACQLLQIGLLCAQASAELRPSMSVVVKMINNDHEIPQPTQPPFINSGSSEFNKSGLPGYKLQPGSNTQSSGDTMTENTNRVFSLWLSTKGYLEFTNRVFGNISSRKLSTTKTNHTLNMLSALLILVKYSSTVNVPLVYFQCLVFLLMKHVLLSKTVMAEPRARTFNITCNHKLEHNPTIFVQNFVATMEKISEQMRNNGYGIAVVGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFYNEYTGPEDKAVCGNTTKKNTSFQAAAKKAVLSAVQAAPNNKGYAREEVAVAGTTNDSAYVLANCWRNLDTKSCRACLENAYSSILGCLPWSEGRALNTGCFVWYSDRDFLNKELENGSSGGNVLVIVISVVSSVIVLVLGIAVGVYIRKHRYIQKKRRGSNDAEKLAKSLHNNSLNFKYSTLEKATNSFDEANKLGQGGFGTVYKGVLPDGREIAIKRLYFNNRHKAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLIYEYLPNKSLDRFIFDKNKGRELNWDKRCHIIIGTAEGLVYLHENSKIRIIHRDIKSSNILLDVKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYGFGVLLLEIITGRQNNRSKALEYSDSLVITTWKHFQSGTAEQLIDPNLVLDDNYRSNVKNEILRVAHIGLLCTQEIPSLRPSMSKALKMLTKKEEHLEAPSNPPFIDESTMELHDQNDDPFYPLNAADSLATMSHSSFYPR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1103 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Ssu5g1103 851 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 1 125 - -
Ssu5g1103 851 Gene3D Transferase(Phosphotransferase) domain 1 601 811 - -
Ssu5g1103 851 Gene3D Phosphorylase Kinase; domain 1 485 600 - -
Ssu5g1103 851 SUPERFAMILY Protein kinase-like (PK-like) 508 829 IPR011009 -
Ssu5g1103 851 Pfam Salt stress response/antifungal 348 442 IPR002902 -
Ssu5g1103 851 Pfam Salt stress response/antifungal 248 333 IPR002902 -
Ssu5g1103 851 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Ssu5g1103 851 CDD STKc_IRAK 531 802 - -
Ssu5g1103 851 ProSiteProfiles Gnk2-homologous domain profile. 234 335 IPR002902 -
Ssu5g1103 851 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 212 832 - -
Ssu5g1103 851 ProSiteProfiles Protein kinase domain profile. 525 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1103 851 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 212 832 - -
Ssu5g1103 851 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Ssu5g1103 851 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1103 851 SUPERFAMILY Protein kinase-like (PK-like) 1 120 IPR011009 -
Ssu5g1103 851 ProSiteProfiles Gnk2-homologous domain profile. 340 445 IPR002902 -
Ssu5g1103 851 SMART serkin_6 525 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1103 851 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 125 - -
Ssu5g1103 851 Pfam Protein kinase domain 526 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1103 851 Pfam Protein tyrosine and serine/threonine kinase 1 99 IPR001245 GO:0004672|GO:0006468
Ssu5g1103 851 Gene3D - 345 445 IPR038408 -
Ssu5g1103 851 Gene3D - 234 335 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1103 Ssu-Chr5 35256700 35270842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1103 204 851 Receptor kinase-like Gene Family AT1G70520 66.923 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g1103 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1103 - - ccaj:109816764 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1103 5 35256700 35270842 Ssu5g1103 5 35256700 35270842 ECH
Ssu5g1103 5 35256700 35270842 Ssu8g2493 8 64691647 64695410 ECH
Ssu2g1812 2 69052510 69055449 Ssu5g1103 5 35256700 35270842 PCT
Ssu5g1103 5 35256700 35270842 Ssu2g1811 2 69036765 69039781 PCT