Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1102 ATGGAAGAGGAAATGTACGGCGTGTCGTCGACGGCGGAGTACTCGGACAAGGCGTTGATGACGCCGGAGACCATATTTCCGGCGGAGTACCAGAGCCTGTTAATGTCCTCCGGCGGGCGGATTCCAATGTTCGGATCCGACGAGTTGCTCTCCGCCGCCGTGACCGAACCCTACCCGAACCTCGCCGTCGCACCGGAAATTCAGCGCCACCACGACACCTCTTCGCTCATCAAAGCCAAAATCGCCTCTCACCCGCACTACCCTCGCCTTCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTTTTTGTTGGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGGGACGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATATAAATCTGATCTGACGCGGCCCTTTGACGAAGCCACAACCTTCCTCAACAAGATCGAAACGCAGCTTAGCGACCTCTGCAGTGGTTCGTCTTCCCTTCCAACGCTTTCTGATGATGGTGGTGTATCTTCAGAAGAAGGTTTTAGTGCTGGAGATGGTGATCCCCAAGACGGTCAATTACGGGGTGAAGATCGAGAGCTTAAGGATAGGCTTTTACGTAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAattttcaaagaagaaaaagaggggTAAGCTGCCGAAAGACGCTAGGCAGACACTACTTCAGTGGTGGAATATTCACTACAAATGGCCCTACCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCTGAGAACATGCCGTTTTCTATGGTGGATGGTCTGACCGGTCGGTTCCTTACTGATGAATGA 954 0.4958 MEEEMYGVSSTAEYSDKALMTPETIFPAEYQSLLMSSGGRIPMFGSDELLSAAVTEPYPNLAVAPEIQRHHDTSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIAFLLEEIRRENDVCKRDVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLSDLCSGSSSLPTLSDDGGVSSEEGFSAGDGDPQDGQLRGEDRELKDRLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1102 317 SMART KNOX2_2 125 176 IPR005541 GO:0003677|GO:0005634
Ssu5g1102 317 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Ssu5g1102 317 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Ssu5g1102 317 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 4 307 - -
Ssu5g1102 317 Pfam KNOX2 domain 128 175 IPR005541 GO:0003677|GO:0005634
Ssu5g1102 317 Pfam ELK domain 214 235 IPR005539 GO:0003677
Ssu5g1102 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 307 - -
Ssu5g1102 317 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Ssu5g1102 317 SMART ELK_2 214 235 IPR005539 GO:0003677
Ssu5g1102 317 MobiDBLite consensus disorder prediction 183 209 - -
Ssu5g1102 317 Pfam KNOX1 domain 77 118 IPR005540 GO:0003677|GO:0005634
Ssu5g1102 317 SMART HOX_1 236 301 IPR001356 GO:0003677
Ssu5g1102 317 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Ssu5g1102 317 ProSiteProfiles ELK domain profile. 214 234 IPR005539 GO:0003677
Ssu5g1102 317 Gene3D - 233 303 - -
Ssu5g1102 317 CDD homeodomain 246 298 IPR001356 GO:0003677
Ssu5g1102 317 SUPERFAMILY Homeodomain-like 235 308 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1102 Ssu-Chr5 35241689 35249308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1102 5 317 Homeobox Transcription Factor Family AT1G23380 68.405 6.74e-150 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu5g1102 KNOX2 3.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1102 - - gmx:100803730 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1102 5 35241689 35249308 Ssu5g1102 5 35241689 35249308 ECH
Ssu2g1809 2 69012579 69020803 Ssu5g1102 5 35241689 35249308 PCT