Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1093 ATGTCAACACTGAACCAACTTTTTGATCTTCCTGAACAGATATGTTACGTGCAATGTGGATTCTGTACCACAACATTAATGGTAAGCGTCCCATGCAGCAGTTTGTCAATGGTGGTTACAGTCAGATGTGGCCACTGCACAAGCCTCCTCTCTGTTAATATGTTGAAAGCTTCCTTTGTCCCTTTCCACCTGCTAGCTTCCCTTACTCATGTTGAGCCAAAAGAAGGTAGTTCAGAAGATGGTGCAAACAAGACTTTGAACAGCTATAATGCTCCCATAACGATCTATTCTGACTGTGAGGAAGAGAACGTGACTCAAATGAACAATGTCGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCTGCTTATAACCGCTTCATCAAAGAAGAGATCAAAAGGCTAAAGGCTGAAAACCCTAACATGGCCCACAAGGAAGCTTTCAGCACTGCGGCAAAAAATCCGGTTGCTTGTATAAGAACCCATTCTTATCTGCTAAAAATGTTAGTCTCCTCCAATAGTGATTTTGGTGGGCCAATTTTCCCCCATCTCAGTGTAAAGGAGATGCAGACAGCTGTAACCGGACAGAGCAACTTGTGGATCTGGACTCCCGCGTAG 621 0.4428 MSTLNQLFDLPEQICYVQCGFCTTTLMVSVPCSSLSMVVTVRCGHCTSLLSVNMLKASFVPFHLLASLTHVEPKEGSSEDGANKTLNSYNAPITIYSDCEEENVTQMNNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNPVACIRTHSYLLKMLVSSNSDFGGPIFPHLSVKEMQTAVTGQSNLWIWTPA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1093 206 Gene3D High mobility group box domain 110 155 IPR036910 -
Ssu5g1093 206 PANTHER PROTEIN YABBY 6-RELATED 1 163 IPR006780 GO:0007275
Ssu5g1093 206 PANTHER AXIAL REGULATOR YABBY 4 1 163 - -
Ssu5g1093 206 CDD HMG-box 120 147 - -
Ssu5g1093 206 Pfam YABBY protein 11 155 IPR006780 GO:0007275
Ssu5g1093 206 SUPERFAMILY HMG-box 108 152 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1093 Ssu-Chr5 34639781 34641700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1093 2 155 C2C2-YABBY Transcription Factor Family AT1G23420 64.634 2.50e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu5g1093 YABBY 1.5e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1093 K25796 - gmx:100803001 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1093 5 34639781 34641700 Ssu5g1093 5 34639781 34641700 ECH
Ssu2g1790 2 68676771 68678681 Ssu5g1093 5 34639781 34641700 PCT