Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1080 ATGAGATTGGCTGCAGGGGAGGATGCGGATGAGGAGGAGGGTGCTAATTTGactgatgaagatgatgatgattcaTTACCATTTGCATGTTTCATTTGTAGAAATCCTTTTGTGGATCCTGTTGTAACCAAATGCAAGCACTACTTCTGCGAGCATTGTGCAttgaagCATCATGCAAAGAATAAGAAGTGTTTTGTTTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGATAAATAA 270 0.3778 MRLAAGEDADEEEGANLTDEDDDDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1080 89 MobiDBLite consensus disorder prediction 1 24 - -
Ssu5g1080 89 Pfam Zinc finger, C3HC4 type (RING finger) 29 71 - -
Ssu5g1080 89 PANTHER ZINC FINGER PROTEIN 183 2 88 IPR039971 -
Ssu5g1080 89 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Ssu5g1080 89 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 2 88 - -
Ssu5g1080 89 CDD RING-HC_RNF113A_B 28 68 - -
Ssu5g1080 89 SUPERFAMILY RING/U-box 29 73 - -
Ssu5g1080 89 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Ssu5g1080 89 MobiDBLite consensus disorder prediction 10 24 - -
Ssu5g1080 89 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 87 IPR013083 -
Ssu5g1080 89 SMART ring_2 30 67 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1080 24 89 C2H2 Transcription Factor Family AT1G01350 83.333 4.05e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1080 K13127 - gmx:100817146 187.578