Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1079 ATGGAAGATTCTGATCAACTCGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGtATGTAGTTTCTTCAGAAAACCtgttaataaaaagaatataaggaAACGGACTGTTGGTAATGAAGGTGATGAGGAGGACTTGAACAAAGAAAGCTCTCTGTTGCATATTCAGAAAAAGACCTTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGCTCTTCAAAAAGCTCTGCATCTGCTGAACCTAGTGAAGAATCTGGAAAACCGGTCTTTCAATTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACAGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGCAGAGAGTTTGAAAGGGAAAAGTGCAAGTTCTGGggatgaaaaattatataagggAATCAATAGTTACAAGGACTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTTCTAGTGAAAAAGCTGGTGGGGCGCATGGTCCTCTTAGGACCTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATGCATGTAAgtttatgcatgattga 657 0.3744 MEDSDQLAKSAENQQTEQVCSFFRKPVNKKNIRKRTVGNEGDEEDLNKESSLLHIQKKTLKPDNKLYFSTGSSKSSASAEPSEESGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAIRERALKQAAESLKGKSASSGDEKLYKGINSYKDYKAGFRREQTISSEKAGGAHGPLRTSAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1079 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Ssu5g1079 218 PANTHER ZINC FINGER PROTEIN 183 9 218 IPR039971 -
Ssu5g1079 218 Gene3D - 190 218 - -
Ssu5g1079 218 SUPERFAMILY CCCH zinc finger 191 218 IPR036855 GO:0046872
Ssu5g1079 218 ProSiteProfiles Zinc finger C3H1-type profile. 192 218 IPR000571 GO:0046872
Ssu5g1079 218 MobiDBLite consensus disorder prediction 64 89 - -
Ssu5g1079 218 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 9 218 - -
Ssu5g1079 218 SMART c3hfinal6 192 218 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1079 Ssu-Chr5 34327066 34327863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1079 10 218 C2H2 Transcription Factor Family AT1G01350 67.464 1.33e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu5g1079 zf-CCCH 5.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1079 K13127 - gmx:100787434 389.037