Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1073 ATGGATATGAATATCATAGAGTTCATGACAGCACACGGTTGCGTCTCTTTAAAGAAAGAAGCCATATCTGCACAGAGCTACACCAGTCTGAAAATCAGTGAACATCTGCCATTAAGGGAACAATACTCACACTGGAGGCCACCACCCATGTCAACTTTAACTCCTACTATCCATCTGCCTGCAACAAAACAGTGCAGCTCCCATCCTAGCATTGAAGGACCCTCCGGTGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCGAAGTTTGCTTGCTTGATTTCACATGAATATCTGAAACAACCAGTTAAAATATCTCCCATCCCCAAAACTAAAATGCCCAAGAACAACAAAACTTCAGGGAAACAGCAGCGAGGTTTGAGTTCCCATTGTAGGAATGGGGAAGAAGATAAATCAAAATTGGTCAAGGAGCCTCAAAAGGAATGCTACCAGGCTAAAAATCTTGTCACGGAGAGGAATAGGAGGAACAAGATCAAAAAAGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCGGACGCAGTTGACTATATAAAGGAATTGCAAATGCAAGTAAAAGAACTCAAAGATGAGGTGAGGGCTTTGGAAGTACAGGACTGTGAGAAGAACACACCACCATTGAGGATGCCAATAGGCAAGGAACAAGAAGGAACCAGAAGAAACACTCTTAATCAAAGTTCTTCTGATTGCACTAAGAAGACACAGATGAAGGTGCAAGTAGAAGTGCATCACATTAGCAAGGCATATTTCTTGATTAAGTTATACTGTGAGCAGAAGCAAGGTGGGTTTTCAAAGTTGGTGGAAGCTATACATTCAATTGGATTGCAGGTGGCTAGTGCCAATACGACCACATTTGATGGCAAAGTCCTGAACATTCTGACAGTTGAGGCAACCAAGCAGGATATTCACCCAACGAAACTGAAAGAGTATTTAATACAGAAGACAAGTTATGACAGATAG 1014 0.4191 MDMNIIEFMTAHGCVSLKKEAISAQSYTSLKISEHLPLREQYSHWRPPPMSTLTPTIHLPATKQCSSHPSIEGPSGGSNPSTEEPSFDSKFACLISHEYLKQPVKISPIPKTKMPKNNKTSGKQQRGLSSHCRNGEEDKSKLVKEPQKECYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQMQVKELKDEVRALEVQDCEKNTPPLRMPIGKEQEGTRRNTLNQSSSDCTKKTQMKVQVEVHHISKAYFLIKLYCEQKQGGFSKLVEAIHSIGLQVASANTTTFDGKVLNILTVEATKQDIHPTKLKEYLIQKTSYDR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1073 337 PANTHER TRANSCRIPTION FACTOR BHLH90 2 334 - -
Ssu5g1073 337 Pfam Helix-loop-helix DNA-binding domain 157 200 IPR011598 GO:0046983
Ssu5g1073 337 MobiDBLite consensus disorder prediction 130 145 - -
Ssu5g1073 337 MobiDBLite consensus disorder prediction 49 85 - -
Ssu5g1073 337 Coils Coil 189 216 - -
Ssu5g1073 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 334 - -
Ssu5g1073 337 Gene3D - 143 217 IPR036638 GO:0046983
Ssu5g1073 337 MobiDBLite consensus disorder prediction 221 248 - -
Ssu5g1073 337 MobiDBLite consensus disorder prediction 105 145 - -
Ssu5g1073 337 SMART finulus 156 205 IPR011598 GO:0046983
Ssu5g1073 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Ssu5g1073 337 MobiDBLite consensus disorder prediction 113 129 - -
Ssu5g1073 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 216 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1073 Ssu-Chr5 33872923 33874516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1073 152 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 37.629 8.31e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1073 HLH 6.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1073 - - gmx:100807261 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1073 5 33872923 33874516 Ssu5g1073 5 33872923 33874516 ECH