Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1072 ATGCCGCAGAACAATGACAATTCTTCCCCTCCTTATTATCCACGTAAACCGCCATCACCAACACAGTTCTATGCTCCACCTCCTCCTGACAGGCCTTCTTCTCCATCTAGGCATGGTGCACCCTCCAATGATTCAACCCCGGGAACCTCCGATAAGTCACAATCAACGGGATTAGGTTCGGGATCGAATCAACAAGCCAATAATGGTGGTGCTTCCAATGCAAACTCAACGGGTTCTTCTCACGCCTCCTCTTCTGGTGATAATTCAGGAAAATATGTTGGCTATGCACTCGCCGTGATTTTTGCTGTTGCCTTTGTTGCTGTAGCTGTAGCTCTTATTTTAGTGtttaagaggaagaaaaaaggagGGGATGCCCATGGAGCACCCTATATGCCACCCGTTAATATTCATGTAAAATCAGGTGATGATGGGCATCACTATGTACAGCAGCCTGGCCTACCACCTTCCCTTGCAAACAACTACGGAAATGGGAATGTGAGCATGAAGCATTTAGGAGCTCCTCCAGACTCAGCTCAGCCCAAGAGTGCTCAGATAGTTTTTAGCTATGACATGGTTATGGAACTAACCAATGCATTTTCTAGTCAAAATGTTATAGGGGAAGGAGGGTTTGGGTGTGTTTACAAAGGTTGGCTGCCAGATGGAAAAGCAGTTGCAGTTAAGAAGCTTAAGGTTGGAAGTGGGCAGGGAGATAGGGAATTCAAGGCTGAAGTAGAGATCATCAGCCGAGTTCATCACCGACATTTGGTGTCATTAGTTGGTTATTGCATATCTGAGCAGCAAAGAATGCTTATATATGAGTACGTTCCTAATGGAACACTCCATCATCACTTGCATGGAAGTGGAATGCCGGTGTTGGATTGGGCCAAGAGGCTTAAGATTGCAATAGGTGCTGCAAAGGGACTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAGTCCGCAAACATACTTTTGGATGATGCTTATGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAGCTGATGCTGAATATACCCATGTATCAACTAGGGTTATGGGGACGTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTACTCATTTGGGGTTGTCCTCCTTGAGCTATTAACGGGAAGGAAACCCATTGATCAAACACAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTTGTGCAATTGAGACACGTGATTTTAGTGAGCTAATAGACCCAAGACTCAAAAAACACTTTGTGGAGAGTGAAATGCTCAGAATGATAGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAGACGGCCTCGTATGGTTCAGGTGGTAAGAGCCTTGGATAGTGGAGACGAAAAATCTGATCTATCTAATGGGGTGAAATATGGTCATAGCACGGCTTATGATTCTGGCCAATATGATAAAGAGATTATGCTATTCAGGAGGATGGCCAATGGAAACTTTGTTGATTCATGA 1551 0.4462 MPQNNDNSSPPYYPRKPPSPTQFYAPPPPDRPSSPSRHGAPSNDSTPGTSDKSQSTGLGSGSNQQANNGGASNANSTGSSHASSSGDNSGKYVGYALAVIFAVAFVAVAVALILVFKRKKKGGDAHGAPYMPPVNIHVKSGDDGHHYVQQPGLPPSLANNYGNGNVSMKHLGAPPDSAQPKSAQIVFSYDMVMELTNAFSSQNVIGEGGFGCVYKGWLPDGKAVAVKKLKVGSGQGDREFKAEVEIISRVHHRHLVSLVGYCISEQQRMLIYEYVPNGTLHHHLHGSGMPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAYEAQVADFGLARLADAEYTHVSTRVMGTFGYMAPEYATSGKLTDRSDVYSFGVVLLELLTGRKPIDQTQPLGDESLVEWARPLLLCAIETRDFSELIDPRLKKHFVESEMLRMIEAAAACVRHSAPRRPRMVQVVRALDSGDEKSDLSNGVKYGHSTAYDSGQYDKEIMLFRRMANGNFVDS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1072 516 MobiDBLite consensus disorder prediction 1 88 - -
Ssu5g1072 516 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 3 512 - -
Ssu5g1072 516 MobiDBLite consensus disorder prediction 11 35 - -
Ssu5g1072 516 MobiDBLite consensus disorder prediction 36 88 - -
Ssu5g1072 516 ProSitePatterns Protein kinases ATP-binding region signature. 205 228 IPR017441 GO:0005524
Ssu5g1072 516 Gene3D Transferase(Phosphotransferase) domain 1 275 492 - -
Ssu5g1072 516 SMART serkin_6 199 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1072 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Ssu5g1072 516 CDD STKc_IRAK 205 473 - -
Ssu5g1072 516 Gene3D Phosphorylase Kinase; domain 1 168 274 - -
Ssu5g1072 516 SUPERFAMILY Protein kinase-like (PK-like) 180 472 IPR011009 -
Ssu5g1072 516 ProSiteProfiles Protein kinase domain profile. 199 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1072 516 Pfam Protein tyrosine and serine/threonine kinase 202 471 IPR001245 GO:0004672|GO:0006468
Ssu5g1072 516 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1072 Ssu-Chr5 33867290 33871935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1072 82 516 Trihelix Transcription Factor Family AT1G70460 64.523 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu5g1072 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1072 - - gmx:100797563 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1072 5 33867290 33871935 Ssu5g1072 5 33867290 33871935 ECH