Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1064 ATGTCCACTAGGGGACGATTGGGGCGGGGCGGACTAGGAGTAGGGCGAAGTGGGGGTGCACTGCACGGACTCATCGAGACTAGGGGCGGCTGCACGGTGGGGGTGGGCATGGGCACCCTTCATCTTGCATGTTCTCAAACTTATGTTTACAATTGTGTCCTCGATATTCAATTTTCTTCAGCCTTGACTAGTTCAAATTGTGAATTGTACAATTGGGGAGGGTTTATCAATGGCTGTTGTGGACTATATTTTGGTGATTACCTATATGCCTTGGGGCTGAGGGCCAACCAAACTggaaaaatattcttgaatTCCTTGGAGCAAAAAAACTGTTTAGCATCAATAGAAGCTTTTGAGAAAAATTTCACTTGTTATGGGATAGAGAAGCTAACAAGTGGACTTGGTGGTTGCTCTGATTACACCATCACAGATGTTATTAATCAGCTTGGAGACAACTTTAGGAGATTGGATGAAGATTGCATGCCTTTAAGCATAAATGGCAGGTCAAATGAAACTTGCACTAAATGTTTGAAAGCATGGGAGGATATCAGTGCAAAATCAGACAGTACAGGGGGATCAGAATCAGCAAATATTAGTGCTTATCTTTGTAGGTTTGCTGTGTTTGTCTCACTAACAAGCACCAGAATTTATGATAGGGAATCAATTCAGGAAGTTTATAAATGCCTTGGGGAACACACCCTTTCTGCAGTCATgacaattttgttgaaaaacatAATGGCAACAGGCATCTGGATTGCCTTTGGCATAACAGGAGTTACAATATTGGTGTTTCTTGCCGCACTGGCATTATTTGTCACAAGAATTAGAAGTGCTCCAACCGTACAAGATGGTACTCAAGACAAAGCCTTTGGCTTTGTGAATTTTTATGGTCCTGAACCATCTATTTCTTTATCTAACGTGACACTATCTAATTATCCAGAGTCTGAATCCACATCACTGAAGATAACTTTGAAGGATGTTTATGTAGCAACAAACAATCTCAGCCCTTCAAATTTTATAGGCCAAGGCATAGCTGGAAAAGTGTACAAAGGTGTACTCTCCAACAATCAATCTGTTGCAGTGAAGCATATCGCCAAAGAAGGTTACATGGAGACATTTGTTAGAGAAGTGAGAAGCCTTTCCCATGTTAGACATCAAAACCTAGTAGCTTTGCTGGGACACTGTGAAAATGATGCTGAGTGCTTCCTAGTGTATGAGCTATGTCACAATGGAAACCTCTCAGAGTGGCTATTTGgCAATGGTAAAGTTCTCTCATGGATTCAAAGACTAGAGATTGCCATTGATAGTGCAAGAGGTCTTGAGTTTCTCCACACCTACCCAAATGGCTGCATTGTTCACCGTGATATAAAGCCATCAAATATTCTCCTTGATGCCAACTTCCAAGCAAAGCTTTCAGATTTTGGGTTGTCCAGGGTTATGGACCTGGGTCAATCGTATGTGAGCTCCGAAGTAAGAGGAACATTTGGTTATATTGATCCTGAATATAGGACAAATCACCATGTAAAAGCCTCAGGAGATGTCTACAGCTTTGGAATAGTGTTATTGCAACTTCTATCAGGACAAAGGGTCCTTAACATTGATTTCCAGAGACCAATGTCCCTGGGTAAAATGGCCAGAGATGTTGCTAGAGGCGGTGATATTTCAGAATTTGCTGACCCTAAACTCAAAGGGGAGTACTCTGCTGAAGCGTTTGACATCGTACTAAAGCTAGCTTTGTCTTGTATAGGGCTCAAGCGGCAAAGGCCATGTATAGAGCAAGTGTTATATAGCCTAGAAAAGGCACTCGATATCTCATTATAG 1821 0.413 MSTRGRLGRGGLGVGRSGGALHGLIETRGGCTVGVGMGTLHLACSQTYVYNCVLDIQFSSALTSSNCELYNWGGFINGCCGLYFGDYLYALGLRANQTGKIFLNSLEQKNCLASIEAFEKNFTCYGIEKLTSGLGGCSDYTITDVINQLGDNFRRLDEDCMPLSINGRSNETCTKCLKAWEDISAKSDSTGGSESANISAYLCRFAVFVSLTSTRIYDRESIQEVYKCLGEHTLSAVMTILLKNIMATGIWIAFGITGVTILVFLAALALFVTRIRSAPTVQDGTQDKAFGFVNFYGPEPSISLSNVTLSNYPESESTSLKITLKDVYVATNNLSPSNFIGQGIAGKVYKGVLSNNQSVAVKHIAKEGYMETFVREVRSLSHVRHQNLVALLGHCENDAECFLVYELCHNGNLSEWLFGNGKVLSWIQRLEIAIDSARGLEFLHTYPNGCIVHRDIKPSNILLDANFQAKLSDFGLSRVMDLGQSYVSSEVRGTFGYIDPEYRTNHHVKASGDVYSFGIVLLQLLSGQRVLNIDFQRPMSLGKMARDVARGGDISEFADPKLKGEYSAEAFDIVLKLALSCIGLKRQRPCIEQVLYSLEKALDISL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1064 606 Pfam SPARK 51 192 IPR043891 -
Ssu5g1064 606 SMART serkin_6 334 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1064 606 Gene3D Transferase(Phosphotransferase) domain 1 408 605 - -
Ssu5g1064 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Ssu5g1064 606 Gene3D Phosphorylase Kinase; domain 1 301 407 - -
Ssu5g1064 606 ProSiteProfiles Protein kinase domain profile. 334 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1064 606 Pfam Protein kinase domain 338 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1064 606 PANTHER OS01G0750732 PROTEIN 311 605 - -
Ssu5g1064 606 PANTHER - 45 278 - -
Ssu5g1064 606 SUPERFAMILY Protein kinase-like (PK-like) 310 598 IPR011009 -
Ssu5g1064 606 PANTHER - 311 605 - -
Ssu5g1064 606 PANTHER OS01G0750732 PROTEIN 45 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1064 Ssu-Chr5 33586171 33590157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1064 300 604 Receptor kinase-like Gene Family AT1G49100 40.127 9.72e-60 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Ssu5g1064 Pkinase 5.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1064 - - gsj:114395768 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1064 5 33586171 33590157 Ssu5g1064 5 33586171 33590157 ECH