Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1062 ATGGCTTCTTCCCTTAGAATTTCAAGGCTCATCTCTCGCTCCTTTTCTTCTACCTCCATCTTTTCTCGAGGTGGGAATGGTTACCTTGGTTCAAGCCACTGTAAATACAGCACTGCTGCTGCCATTGAAGAACCCATTAAACCAGCGGTACAAGTAGAACACACCCAACTCTTAATTGATGGAAAATTCGTAGATGCTGCTTCTGGTAAAACTTTTCCAACGTTGGATCCGAGGACGGGGGAAGTGATTGCTCATGTTGCTGAGGGGCACTCTGAAGATGTTGATCGAGCAGTTGCAGCTGCACGCAAAGCTTTTGATCATGGGCCATGGCCTAAGATTACAGCCTATGAAAGGCAAAGGATTTTGTTGCGTGCAGCTGATCTGATTGAAAAGCATAATGATGAGCTTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTATGAACAATCTGCTAAGATTGAAATTCCAATGTGTGTTCGCCTAATTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTAACAGTTCCGGCTGATGGACCATATCATGTGCAAACATTGCATGAACCCATTGGCGTGGCAGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGCTGAGCAGACACCAGTTGTCTGCTTTGTATGCAGCAAAACTATTTCATGAGGCTGGACTTCCTCATGGTGTTTTAAATGTGGTATCAGGCTTTGGTCCAACTGCTGGTGCTGCTCTTGCTAGTCACATGGAAGTTGATAAGCTTGCTTTTACTGGTTCCACTGATACTGGGAAAGTTGTCCTTGAACTGGCAGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTGTGTGAAGATGCTGATATAGATCAGGCTGTTGAGCTAGCACACTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTCGAACATTTGTACATGAAAGTGTATACGATGAGTTTGTTGAGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGGGTGGAATAGAGCAAGGTCCTCAGGTAAATTGCTTAGAATCCTTTACATTGCATCCTCATGTTTGA 1131 0.4421 MASSLRISRLISRSFSSTSIFSRGGNGYLGSSHCKYSTAAAIEEPIKPAVQVEHTQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDHGPWPKITAYERQRILLRAADLIEKHNDELAALETWDNGKPYEQSAKIEIPMCVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKLSRHQLSALYAAKLFHEAGLPHGVLNVVSGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADIDQAVELAHFALFFNQGQCCCAGSRTFVHESVYDEFVEKAKARALKRVVGDPFKGGIEQGPQVNCLESFTLHPHV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1062 376 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 26 365 - -
Ssu5g1062 376 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 26 365 - -
Ssu5g1062 376 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 290 369 IPR016163 GO:0016620
Ssu5g1062 376 SUPERFAMILY ALDH-like 50 365 IPR016161 GO:0016491
Ssu5g1062 376 Pfam Aldehyde dehydrogenase family 63 365 IPR015590 GO:0016491
Ssu5g1062 376 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 314 325 IPR016160 GO:0016491
Ssu5g1062 376 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 286 293 IPR029510 GO:0016491
Ssu5g1062 376 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 39 289 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1062 Ssu-Chr5 33509307 33511894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1062 6 365 Aldehyde Dehydrogenase Gene Family AT3G48000 74.670 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1062 K00128 - gmx:100777399 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1062 5 33509307 33511894 Ssu5g1062 5 33509307 33511894 ECH
Ssu2g1766 2 68248172 68251987 Ssu5g1062 5 33509307 33511894 PCT