Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1058 ATGAAGATGGATAGGATTGAAGAGAGCAGCGCAAGGTTGTCGGGTAGAAGCAGCAGTGGTGGGAGCAGTGAGTCAAGGTGGGTTGATGGCAGTGAAGTGGACCGGGATGAGGTTCCTATGTGGTCAAGGCATGATGGTAGAGAAGGGTATGGGCCAATCAGGAGGAGGCTTGCCAAGAAGCCCAGGAGAGTTGATTCGTTTGATGTTGAAGCCATGGAGATTGCTGGAACTCATGCTCACCATTCCAAGGACCTTTCCCTCTGGCCCACTCTTGCATTGGCATTTAAGACTCTTGGTGTGGTATATGGTGACATGGGAACAAGTCCTCTATATGTTTTTGCTGATGTCTTCAGCAAGGTTTCTGTTGAATCAGATGCTAATATCTTGGGGGCATTATCATTAGTAATGTATACAATAGCACTTATTCCATTAgccaaatatgtttttatagtCCTCAAAGCAAATGATAATGGAGAAGGAGGAACATTTGCACTATACTCGCTGATTTGCAGGTATGCAAATGTGAGTCTGCTTCCCAATCGCCAACAAGCTGATGAATATATCTCTAGTTTTAAGCTCAAACTGCCTACTCCAGAACTAGAAAgggctttaaaaataaaggagacTTTGGAAAGGAAATCATTTTGGAAAAACCTATTATTGGTGTTGGTTCTTCTGGGGGCTTCCATGGTTATTGGAGATGGTATTCTAACCCCAGCAATATCAGTGATGTCTGCCATAAGTGGTCTGCAGGAtcaaatcaatggatttggtaCTGGTGAAGTAGTTTGTATTTCTATTGTAGTCCTGGTGGCTTTGTTCAGCATACAACGGTTTGGTACCGGTAAAGTGGGTTTCATGTTTGCCCCTATACTTGCCTTATGGTTCTTTTCTCTAGGTTCTATTGGAATctataatatacttaaatatgaTATCACTGTTCTGAGAGCATTCAATCCAGCttatatctattatttcttCAAGAATAATGGCAAAGGTGCATGGTCAGCTCTTGGTGGTTGTGTTCTGTGCATTACAGGTGCAGAAGCAATGTTTGCAGATCTGGGTCATTTTTCTGTACCAGCAATACAGATTGCCTTCACTTGTGTCGTATTTCCCTGTCTCCTCCTTGCTTATATGGGCCAAGCTGCTTATTTGACGAATAACCCAAGTTCTTATTCAAGTGTATTCTACAAGTCTGTTCCAGAGAGTCTCTTCTGGCCAGTGTTTGTGATAGCCACACTTGCTGCTATGATTGCCAGCCAAGCAATGATATCTGCTACATTTTCATGCATAAAGCAATCTATGGCTTTGGGATGCTTCCCCAGGCTCAAGATAATTCACACCTCAAAAAAGTTCATGGGTCAAATATACATCCCTGTAATTAACTGGTTTCTGATGATCATGTGCATAGTAGTGGTTTCCATCTTCCAAAGCACTACTGATATTGCAAATGCGTATGGCATTGCTGAAGTTGGTGTCATGATGGTTAGCACCACCTTGGTGACCCTTGTAATGCTTTTAATTTGGCAGACTAACTTGTTTTTGGCACTTTGTTTCCCTCTTGTATTTGGTTCGGTGGAGTTAATTTACATGTCTTCTGTCCTATCCAAAATCGTCGAGGGTGGCTGGCTTCCCCTTGCCTTTGCTACCATTTTCCTCTCTGTGATGTACACATGGAACTATGGGAGTGTATTGAAGTACCGAAGTGAAGTTAGAGAGAAGGTTTCAGTGGACTCAATGCTTGAGCTTGGCTCCAATCTTGGAACAGTAAGAGTGCCAGGAATAGGATTGCTATATAACGAGCTTGTCCAGGGCATTCCCTCCATTTTCTTGCACTTCCTGCTGAACCTTCCAGCTCTTCACTCCACTATAGTCTTTGTCTGCATTAAATATGTCCCAGTCCCTGTGGTTCCTCAAGAGGAAAGATTTCTATTTCGAAGAGTTTGCCCCAAAGATTACCACATATTCCGCTGTGTCGCCAGATATGGTTACAAAGATGTAAGGAAGGAAGATCACCATGCATTTGAGCAACTTCTTATTGAAAGTCTTGAGAAGTTCTTGAGAAGGGAAGCTCAAGAAACAGCCCTGGAGTTGGAGGGCAACTTAACTGATGACATAGACAGTGTCTCAGTGTACACAAAGGATTCTGATCTTCCTGTTGAAAGTGGGGCTGAGGAGCTTAGGATTCCACTGATGCGTGATCAGAAATTGGAAGAAACAGGAACTTCTTCCGCCTCTCAGGACGTTGCATCAGCATTGCCATCTAGTTACATGTCATCAGATGAAGATCCTGGTCTTGAATATGAGCTTTCAGCCCTTAGAGAAGCAATAGAATCCGGATTCACCTATTTGCTTGGACATGGGGATGTGAGGGCAAAGAAGAACTCTttcttctttaagaaattggtgaTAAATTATTTCTATGCATTTCTCAGAAAGAACTGCAGAGGAGGTACAGCAAACATGAGAGTACCTCACACCAATATCATTCAAGTTGGGATGACATACATGGTCTGA 2520 0.4139 MKMDRIEESSARLSGRSSSGGSSESRWVDGSEVDRDEVPMWSRHDGREGYGPIRRRLAKKPRRVDSFDVEAMEIAGTHAHHSKDLSLWPTLALAFKTLGVVYGDMGTSPLYVFADVFSKVSVESDANILGALSLVMYTIALIPLAKYVFIVLKANDNGEGGTFALYSLICRYANVSLLPNRQQADEYISSFKLKLPTPELERALKIKETLERKSFWKNLLLVLVLLGASMVIGDGILTPAISVMSAISGLQDQINGFGTGEVVCISIVVLVALFSIQRFGTGKVGFMFAPILALWFFSLGSIGIYNILKYDITVLRAFNPAYIYYFFKNNGKGAWSALGGCVLCITGAEAMFADLGHFSVPAIQIAFTCVVFPCLLLAYMGQAAYLTNNPSSYSSVFYKSVPESLFWPVFVIATLAAMIASQAMISATFSCIKQSMALGCFPRLKIIHTSKKFMGQIYIPVINWFLMIMCIVVVSIFQSTTDIANAYGIAEVGVMMVSTTLVTLVMLLIWQTNLFLALCFPLVFGSVELIYMSSVLSKIVEGGWLPLAFATIFLSVMYTWNYGSVLKYRSEVREKVSVDSMLELGSNLGTVRVPGIGLLYNELVQGIPSIFLHFLLNLPALHSTIVFVCIKYVPVPVVPQEERFLFRRVCPKDYHIFRCVARYGYKDVRKEDHHAFEQLLIESLEKFLRREAQETALELEGNLTDDIDSVSVYTKDSDLPVESGAEELRIPLMRDQKLEETGTSSASQDVASALPSSYMSSDEDPGLEYELSALREAIESGFTYLLGHGDVRAKKNSFFFKKLVINYFYAFLRKNCRGGTANMRVPHTNIIQVGMTYMV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1058 839 MobiDBLite consensus disorder prediction 1 32 - -
Ssu5g1058 839 Pfam K+ potassium transporter 94 667 IPR003855 GO:0015079|GO:0016020|GO:0071805
Ssu5g1058 839 PANTHER POTASSIUM TRANSPORTER 12-RELATED 7 839 - -
Ssu5g1058 839 MobiDBLite consensus disorder prediction 12 26 - -
Ssu5g1058 839 TIGRFAM kup: potassium uptake protein 93 839 IPR003855 GO:0015079|GO:0016020|GO:0071805
Ssu5g1058 839 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 7 839 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1058 Ssu-Chr5 33286587 33294142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1058 3 839 Inorganic Solute Cotransporters AT1G60160 74.197 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1058 K03549 - gmx:100814419 1491.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1058 5 33286587 33294142 Ssu5g1058 5 33286587 33294142 ECH
Ssu5g1058 5 33286587 33294142 Ssu2g1764 2 68196911 68201277 PCT