Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1057 ATGGATCTGGAACGTGGGATTCTTCAAAACTCTGCTAAGaggAAAGAATCATGGAAAACGGTTCTGACTTTGGCATATCAGAGTCTTGGAGTTGTGTATGGAGAGATAAGCACTTCACCACTCTACGTGTACAGGAACACATTTGCTGAAGATATTGGTCACTCAGAGACCAATGAAGAGATTTATGGTGTTTTGTCTTTGGTGTTCTGGACTCTTACATTGGTGCCTTTGGTGAAGTATGTGTTCATAGTGCTGAAAGCTGATGACAATGGTGAAGGTGGCACGTTTGCGCTGTACTCTTTGCTGTGTCGCCATGCCAAAGTTGGCTTGTTGCCTAATTGCCAATTGGCAGATGAGGAGCTCTCGGAGTACAAGAAGAGCAGCTATGGTGTGGCACCAGAGAGAAGCCTTGCCTCCAGGCTCAAGTCCTTGTTGGAGAGGCACAAGGTCTTGCAGAGGATTTTGCTGGTTCTGGCTTTGTTAGGGACTTGCATGGTGATTGGAGTTGGAGTCCTTAAGCCTGCTATTTCTGTTTTCTCAGCAGTGTCTGGCCTTGAGCTTTCAATGTCCAAGGAGCATCACAGATATGTAGAAGTACCAGGTGCATGCATCATTTTAATAGGCTTGTTTGCCCTTCAACGTTATGGCACACACAGGATTGGCTTCTTGTTTGCTCCCATAGTTTGTATATGGCTCTTCTGCATCAGTGCCAttggtatatataatatctttcaCTGGAACCCTCATGTGTACCAAGCACTCTCTCCATATTatgttttccaatttttaaGAAAGACTAGGAGAGGGGGGTGGATGGCCCTTGGTGGAATTTTGCTTTGCATAACAGGATCAGAAGCCATGTTTGCTGGTCTTGGGCACTTTTCTCAGCTATCAATCAAGATTGCTTTCGCCTCTTTTGTTTATCCATCTTTAATTCTCGCGTATATGGGGCAAGCTGCTTATTTTTCTAGACACCATGATGTTGAGCAAGAGTACCACTTTGGTTTTTATGTATCTGTACCAGAGAAGTTGAGATGGCCTGTTCTGGTGATAGCCATACTTGCTGCAGTTGGAGGAAGCCAATCCATCATCACTGGAACTTTCTCAATCATCAGGCAATGCTCTGCATTGAGTTGCTTCCCTAGAGTTAAAGTGGTTCACACTTCATCCAAAATTCATGGACAAGTATATATCCCTGAGATCAACTGGTTGTTGATGCTCTTGTGTTTGGCTGTAACTATTGGTTTCAGAGACACAAAGCTTATGGGTAATGCATCAGGTTTGGCAGTTGTCTCGGTGATGCTGGTCACCACATGTTTGATGTCACTGGTTATTGTAATCTGCTGGCACCAGAGTGTTTTTCTTGCAATTGGGTTTGTTCTCTTCTTTGGCACCAGTGAGGCTCTCTTCTTCTCAGCTTCTGTGATCAAGTTCTTTGAAGGAGCATGGGTGCCAGTTGCCTTGGCGTTTGTATTTCTCTCTGCCATGTGCGTGTGGCACTATGGCACTCTCAAAAAGTATGAATTTGATGTTCAAAACAAGGTTTCAATCAGCTGGCTACTTAGCCTTGGCCCTAGCTTAGGCTTTACTAGAGTGCGTGGGATTGGCCTTGTGCACACTGAGCTAGTGTCTGGAATTCCTGCTATTTTCTCCCACTTTGTGACCAACCTACCAGCATTCCACCAGGTCCTTGTTTTCCTATGCATCAAGCATGTGCCAGTTCCACATGTCAGACCTGAGGAGAGGTTTCTCGTCAGTCGCGTCGGTCCAAGAGATTTCAGAGTGTACAGGTGCATAGTGAGGTATGGATACCATGATGTCCACAAAGATGATGATGAGTTTGAGAAAGACCTTGTGGGCAGCATAGCAAAGTTCATACAAGCAGGAAGTGCTGGATGCAACTCTTCACAAGATGAGCCTGAAAAGGATGGCAAAATGACTGTTGTTGGAACCTGTTCTAGCCACCCCATTTTGGTGAGTGAGCATGCTGAGGTTGATAATGATGTGGACTTAGCTGAGACATCAGAGTCACACAAGGTGATCCAACCAaagaaaagggttaggtttGTTGTGCCAGAGAGTCCAAAGATTGACACTGGTGCAATGGAGGAATTGAAGGAGCTGATGGAAGCCAGGGAAGTTGGGGTAGCCTACATTATAGGACAGTCCCACATGAGAGCCAAACCAGGGTCCAGCATGCTGAAGAAGTTGGTTATTAATTTGGGGTATGAATTCTTACGGAAGAATAGCAGGGTGCCCTCCTATGTGCTTAGTGCTCCTCGTGCATCATCTTTGGAGGTTGGGATGATGTACCAagtttaa 2322 0.4449 MDLERGILQNSAKRKESWKTVLTLAYQSLGVVYGEISTSPLYVYRNTFAEDIGHSETNEEIYGVLSLVFWTLTLVPLVKYVFIVLKADDNGEGGTFALYSLLCRHAKVGLLPNCQLADEELSEYKKSSYGVAPERSLASRLKSLLERHKVLQRILLVLALLGTCMVIGVGVLKPAISVFSAVSGLELSMSKEHHRYVEVPGACIILIGLFALQRYGTHRIGFLFAPIVCIWLFCISAIGIYNIFHWNPHVYQALSPYYVFQFLRKTRRGGWMALGGILLCITGSEAMFAGLGHFSQLSIKIAFASFVYPSLILAYMGQAAYFSRHHDVEQEYHFGFYVSVPEKLRWPVLVIAILAAVGGSQSIITGTFSIIRQCSALSCFPRVKVVHTSSKIHGQVYIPEINWLLMLLCLAVTIGFRDTKLMGNASGLAVVSVMLVTTCLMSLVIVICWHQSVFLAIGFVLFFGTSEALFFSASVIKFFEGAWVPVALAFVFLSAMCVWHYGTLKKYEFDVQNKVSISWLLSLGPSLGFTRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKHVPVPHVRPEERFLVSRVGPRDFRVYRCIVRYGYHDVHKDDDEFEKDLVGSIAKFIQAGSAGCNSSQDEPEKDGKMTVVGTCSSHPILVSEHAEVDNDVDLAETSESHKVIQPKKRVRFVVPESPKIDTGAMEELKELMEAREVGVAYIIGQSHMRAKPGSSMLKKLVINLGYEFLRKNSRVPSYVLSAPRASSLEVGMMYQV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1057 773 PANTHER POTASSIUM TRANSPORTER 6 1 773 - -
Ssu5g1057 773 TIGRFAM kup: potassium uptake protein 24 773 IPR003855 GO:0015079|GO:0016020|GO:0071805
Ssu5g1057 773 Pfam K+ potassium transporter 26 606 IPR003855 GO:0015079|GO:0016020|GO:0071805
Ssu5g1057 773 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 773 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1057 Ssu-Chr5 33240917 33246795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1057 1 773 Inorganic Solute Cotransporters AT1G70300 72.321 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1057 K03549 - gmx:100784861 1417.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1057 5 33240917 33246795 Ssu5g1057 5 33240917 33246795 ECH
Ssu2g1764 2 68196911 68201277 Ssu5g1057 5 33240917 33246795 PCT