Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1056 ATGGGTGAGAATCATGTGCCTCGTTCTACAGTAACTCcaagatataaatttaaagaagaaaaaaagaataaaatctcGCAGTTGCCGTTCGCGTTTGTTCTTCGTTCTCCAAAACCGAAACGAAActtctctctttctatctctaGCGCAGTTTCGACTTTCTCTCTCATCACTTCGCCGGAATCTCGCCGTCTCCGTCGCCGGAAAGGTGAGACTCGGAGCTCGCGACTCGCGAGTCGTGACGACTCAAGGTTTGAAGAAAGGTCCCCTTGTCCAGTCATGGCTTCAAGATCATATGTTAATCTCTTAGACTTAGCTGGTGGAGACTTGCTTGATATTCCTCACACCCCAAGAGCTCTTCCAAGGGTTATGACTGTTCCTGGAATTATTTCTGACTTGGATGGTTATGGTTGTAATGATGGGGATTCAGATGTTAGCTCTTCTGGATTTAGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGTGCTTCAGTTGGGATGAGGattcaattttattacaattaaaagatGGTTTTTCTTCTGATACTGAGGTAATCTTTGTGGGTTCCCTCAAGGTTGAAATAGATGCCTGTGAGCAGGAAGCAGTTGCGCAGAGATTGCTGGATGACTTTAATTGTGTACCTACCTTTCTACCTCATGATCTCCAGAAAAAGTTCTACCTTGGCTTTTGTAAGCAGCAACTTTGGCCTCTCTTTCATTATATGCTACCCATATGCCCAGATCATGGTGATCGCTTTGACCGTATACTTTGGCGGGCTTATGTTTCtgcaaacaaaatatttgcagACAAGGTCATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTAATGGTTTTGCCTACTTTCTTGAGAAAGCGATATAATCGGGTTAAACTTGGGTTCTTTCTTCACAGTCCTTTCCCCTCTTCTGAAATCTACCGAACTTTACCAGTAAGGGATGaaattttgaggggattgttgAACTCTGATTTAATTGGCTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGCAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGCCgcactatatttattaaaattttgcctGTAGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCAATCTTCTACATCTGCTAAACTAAAAGAGGTTCAGGAAGAGTTTAAGGGTAAGAAAGTAATTCTTGGTGTTGATGACATGGATATTTTTAAGGGCATTAGTCTGAAACTTCTGGCTGTGGAGCATCTGTTGCAGCAGAATCCAGATTTGCAGGGCAAAATTGTCCTAGTTCAAATTGTAAATCCTGCAAGGGGCTCAGGGAAGGATGTTCAGGAAGCAAAGAACGAAACATATTTAATTGCCCAGAGGATCAATGATACATATAGCTCAAATAATTATCAGCCAGTCATTCTCATTGACCGCCCTGTTCCTCGCTTTGAGAAGAGTGCTTATTATGCTGTAGCTGAATGTTGCATTGTCAATGCTGTAAGGGATGGTATGAACTTAGTCCCCTACAAATATATCGTCTGCAGACAGGGAACTGCACAACTAGATGAAGCATTGGGTAGAAAGAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGGGCAATAAGGGTCAATCCATGGGACATAGATTCCGTAGCCGATGCTATGTATGCAGCCCTTACTATGAGTGATTCAGAGAAGTGGTTGCGCCATGAGAAACACTATCGGTATGTGAGTACTCATCATGTGGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGAGGTTCAGAGTTGTTTCTCTTTCTCATGGTTTTAGGAAGTTGTCAATTGACCATATTGTTTCGGCATACAAGAGAACCAATAGAAGGGCTATCTTTCTTGATTATGATGGTACTGTTGTACCACAATCTTCCATAAGTAAAATACCCAGCCCTGAAGTCATCTCCGTCTTAGATGCTCTGTGTAACGATCCCAAGAATATTGTGTTCATTGTTAGTGGGAGGGGAAGAGATTCACTGAGTGAATGGTTTACTTCATGCCAAATGCTGGGACTTGCAGCAGAACATGGGTACTTTTTAAGGTGGAATAGAGATTCAGAATGGGAAGCTAGTCACTTGTCTGCGGACCTTGAATGGAAAAATATAGTGGAACCTGTTATGCAGTCATACACAGAAGCAACCGATGGTTCTAATATTGAAACTAAGGAGAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGTTGGATCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGTTGTTACGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAGGGTTTGGTAGCTGAACAGGTTCTTTTGACCATGGTTAATGGCGGTAATCCACCAGATTTTGTACTGTGCATTGGAGATGATAGGTCTGATGAGGACATGTTTGAGAGCATTTTGAGGACAGTTTCGAGCCCATCATTACCATCAGCTCCAGAGATATTTGCCTGCACTGTAGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGAAGCTGTTGATGTTGTAAAGTTGCTTCAGGGCCTTGCTGCTTCATCCAATCCAAAACCCAGGCATCTTGCTCATTTTCAGGTCTCTTTTGAGAGCACAGTTTGA 2865 0.4098 MGENHVPRSTVTPRYKFKEEKKNKISQLPFAFVLRSPKPKRNFSLSISSAVSTFSLITSPESRRLRRRKGETRSSRLASRDDSRFEERSPCPVMASRSYVNLLDLAGGDLLDIPHTPRALPRVMTVPGIISDLDGYGCNDGDSDVSSSGFRERKIIVANMLPLQAKRDIETAKWCFSWDEDSILLQLKDGFSSDTEVIFVGSLKVEIDACEQEAVAQRLLDDFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICPDHGDRFDRILWRAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNQSSTSAKLKEVQEEFKGKKVILGVDDMDIFKGISLKLLAVEHLLQQNPDLQGKIVLVQIVNPARGSGKDVQEAKNETYLIAQRINDTYSSNNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDEALGRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDSVADAMYAALTMSDSEKWLRHEKHYRYVSTHHVAYWARSFMQDLERACKDHYTKRCWGFGLGLRFRVVSLSHGFRKLSIDHIVSAYKRTNRRAIFLDYDGTVVPQSSISKIPSPEVISVLDALCNDPKNIVFIVSGRGRDSLSEWFTSCQMLGLAAEHGYFLRWNRDSEWEASHLSADLEWKNIVEPVMQSYTEATDGSNIETKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVTRGQHIVEVKPQGISKGLVAEQVLLTMVNGGNPPDFVLCIGDDRSDEDMFESILRTVSSPSLPSAPEIFACTVGRKPSKAKYFLDEAVDVVKLLQGLAASSNPKPRHLAHFQVSFESTV 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1056 954 Gene3D Glycogen Phosphorylase B; 146 406 - -
Ssu5g1056 954 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 94 945 - -
Ssu5g1056 954 Pfam Trehalose-phosphatase 688 921 IPR003337 GO:0003824|GO:0005992
Ssu5g1056 954 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 153 642 - -
Ssu5g1056 954 Pfam Glycosyltransferase family 20 153 638 IPR001830 GO:0003824|GO:0005992
Ssu5g1056 954 MobiDBLite consensus disorder prediction 62 84 - -
Ssu5g1056 954 CDD GT20_TPS 153 638 IPR001830 GO:0003824|GO:0005992
Ssu5g1056 954 Gene3D - 814 946 IPR023214 -
Ssu5g1056 954 Gene3D - 684 800 IPR023214 -
Ssu5g1056 954 Gene3D Glycogen Phosphorylase B; 407 622 - -
Ssu5g1056 954 SUPERFAMILY HAD-like 685 933 IPR036412 -
Ssu5g1056 954 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 94 945 IPR001830 GO:0003824|GO:0005992
Ssu5g1056 954 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 686 888 IPR006379 -
Ssu5g1056 954 CDD HAD_TPP 686 927 - -
Ssu5g1056 954 TIGRFAM T6PP: trehalose-phosphatase 683 932 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1056 Ssu-Chr5 33197146 33202692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1056 94 954 Trehalose Biosynthesis Gene Families AT1G23870 75.115 0.0 1368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1056 K16055 - gmx:100775779 1661.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1056 5 33197146 33202692 Ssu5g1056 5 33197146 33202692 ECH
Ssu2g1763 2 68147730 68148974 Ssu5g1056 5 33197146 33202692 PCT