Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1053 ATGTCTGAATCTGATCCTTACCAGAGACAGTTACAGCAGCTATTCCACCTCCATGATTCAGGTCTAGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCCTCTACAAGGACATAACAGGTTTGAAGGAGCCATTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGTTGCTGCCCCTTTGCAACCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTGTCAAATTCAACTTGTCCTCTCTGTAGAGGGAGTCTTTATGAGCCAGGCTTTGCCTTTGAAAACCCAGTTTATAACTTTGAGGGTCTGAGGGAGGAAGATGGGGTGTCAGGCAGTGTTGCCGGTGAGGCTGCTTGTGTTAACAAACATGCAGAGAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAGATAATGGAGAGGGGGTGGAAAGAGGTGGAGGAGGGGAGAGCAGTACAAGTAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCCTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGGAGGTGCCAGTGGGGGCAGTATGAGACAATTGAAAGGGAGATTGGCCCATTTTGGGAACTCCTCCACTGATGGGGATGTTGAGGGGAAAAAAATCAACATTGCTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAAGAAGGACAAGGTATCAAGTTCACCACAAAACCATTTGGGTGGTTCTAATGTCACTGCAGCTTTGCCGTGGATGAATAGAGCTCAAGGTACATGA 849 0.4641 MSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDITGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYNFEGLREEDGVSGSVAGEAACVNKHAENHIMSGKRVFSVRLGKFRSSDNGEGVERGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGGASGGSMRQLKGRLAHFGNSSTDGDVEGKKINIARKGESFSVSKIWQWSKKDKVSSSPQNHLGGSNVTAALPWMNRAQGT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1053 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 94 IPR013083 -
Ssu5g1053 282 ProSiteProfiles Zinc finger RING-type profile. 47 89 IPR001841 -
Ssu5g1053 282 Pfam Ring finger domain 46 89 IPR001841 -
Ssu5g1053 282 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 274 - -
Ssu5g1053 282 SMART ring_2 47 88 IPR001841 -
Ssu5g1053 282 CDD RING-H2_PA-TM-RING 46 89 - -
Ssu5g1053 282 MobiDBLite consensus disorder prediction 256 282 - -
Ssu5g1053 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 274 - -
Ssu5g1053 282 SUPERFAMILY RING/U-box 26 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1053 Ssu-Chr5 33141363 33142211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1053 8 255 C3H Transcription Factor Family AT2G18650 39.855 7.08e-52 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1053 - - gmx:100818135 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1758 2 68076478 68077635 Ssu5g1053 5 33141363 33142211 PCT