Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1052 ATGGGTTGCAAGGACATGGCAAAGGTGAAGTGggggaagaggaggaggaggaggaggaggcaAGAGGGTGTTGAGAGGAGAATGAAGAAGTTGCAGAGGCTGGTTCCAGGCGGCGCCGGAATGAACCCGGACCTGCTTTTCCTCAAGACGGCGGAGCACATCTTGCAATTGAGGTTGCAACTCAATGTTTTGCAAGCTCTTTCCAAGATTTTCAATGCCTGA 222 0.4369 MGCKDMAKVKWGKRRRRRRRQEGVERRMKKLQRLVPGGAGMNPDLLFLKTAEHILQLRLQLNVLQALSKIFNA 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1052 73 MobiDBLite consensus disorder prediction 9 24 - -
Ssu5g1052 73 CDD bHLH_AtIBH1_like 22 67 IPR044549 GO:0006355
Ssu5g1052 73 PANTHER TRANSCRIPTION FACTOR 3 71 - -
Ssu5g1052 73 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 68 IPR036638 GO:0046983
Ssu5g1052 73 MobiDBLite consensus disorder prediction 1 26 - -
Ssu5g1052 73 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 3 71 IPR044660 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1052 10 67 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43060 42.623 4.45e-08 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1052 - - vra:106779907 122.864