Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1047 ATGGAAGAACATCTCAGTCCATTGGATGTCACACATCTCCTTCAACATGAACTCAGAAGCTTGTGCATCCATGAAAATTCTCAATGGGTCTATGCAGTCTTCTGGAGGATCTTGCCAAGAAACTACCCACCACCCAAATGGGAAGGCGAAGGGGCTTGTGATAGATCCCGAGGAAACAGAAGGAACTGGATATTGGTCTGGGAAGATGGTTTCTGCAACTTTGCTGCCTCATCAGCACCTAAAATTAACTCTGGCGATTGTCCTTCCTCATCAGTTTATGGGAATTATGAATGCCAGCCCTACCAAGGGCTCCAACCTGAGCTCTTCTTCAAGATGTCACATGAAATCTATAACTATGGAGAAGGCTTGATAGGGAAAGTGGCTGCGGATCAGAGTCACAAGTGGATATACAACGAATCTAATGATCAAGAAATCAACTTATTGTCATCATGGCAAAATTCAGCAGATTCGTATCCTAGGACCTGGGAAGCCCAGTTTCAGTCTGGTATAAAGACCATAGCCCTTATTGCAGTAAGAGAAGGAGTTATTCAATTAGGAGGTGTTCACAAGGTGATTGAAGACCAAAACTACGTGGTACTGTTGAGAAGAAGGTTCAACTACATTGAGAGCATCCCTGGCGTGCTCTTACCACACCCATCACCTTCTGCGTACCAATGTAAGGTGGAAGGCCACGGTAGCCCAGAACAATGGCATTTCCAAGGCAGCTTTGCAGCCCCAATTGAATTATATGACCATTTCAACCAGCGACTGGAGATAACTCCCTCAGTAAGCAGCCTTGAGGCCATACTCTTTAACCACCCCTTAGTGgagccaccaccaccaacacaGTCCCATCTGATGCCATCCCAAAGGGGCTTGGAATTCATGGGGTTGCAAAATGAAGTCATGACAAAGGAAGAGTTACACTGA 930 0.4452 MEEHLSPLDVTHLLQHELRSLCIHENSQWVYAVFWRILPRNYPPPKWEGEGACDRSRGNRRNWILVWEDGFCNFAASSAPKINSGDCPSSSVYGNYECQPYQGLQPELFFKMSHEIYNYGEGLIGKVAADQSHKWIYNESNDQEINLLSSWQNSADSYPRTWEAQFQSGIKTIALIAVREGVIQLGGVHKVIEDQNYVVLLRRRFNYIESIPGVLLPHPSPSAYQCKVEGHGSPEQWHFQGSFAAPIELYDHFNQRLEITPSVSSLEAILFNHPLVEPPPPTQSHLMPSQRGLEFMGLQNEVMTKEELH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1047 309 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 1 286 - -
Ssu5g1047 309 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 205 IPR025610 -
Ssu5g1047 309 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1047 Ssu-Chr5 33005705 33010017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1047 15 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 31.771 1.79e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1047 - - vun:114173114 498.049