Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1029 ATGGCGCATCAGGGGGAACCGACGAAGCTGCGGTGGGGCGAGCTGGAGGAGGACGATGCCGAGGATCTGGACTTCCTTCTGCCGCCGCGGCAGGTGATAGGGCCGGACGAGAACGGCATAAAGAAGGTGATCGAGTACAAGTTCGACGAGGACGGCAACAAGGTCAAGATCACCACCACCACGCGCACCCGCAAGCTCGCCAACGCGCGTCTCAGCAAACGCGCCGTCGAGCGCCGCTCCTGGCCCAAGTTCGGCGACGCCGTCCACGAGGACGTCGGCAGCCGCCTCACCATGGTCTCCACCGAAGAGATCCTCATCGAACGCCCCAAGCCTCTGgGTGCCAAGACGGAAGAGCCAAAGACTGCTGGAGACCCGTTGGCTCAATTTCAGAAAGGTGCTGTTCTTATGGTCTGTAGGACTTGTGGGAAGAAGGGTGATCACTGGACTTCAAGGTGTCCATATAAGGATCTTGCCCCACCATCCGAAGGATTCGTTGATAAACCTGCAGCATCGGATGCTGCAGCAGCCGCGACTGGGGCAACCAAGGGAGCATATGTGCCTCCTGGTATGAGGGCAGGTGCTGAGAGGACTGGCGGATCAGACATGCGGCGTAGGAACGATGAGAATTCTGTAAGGGTAACTAACCTCTCCGAGGACACGAGAGAGCCCGATTTGCTGGAGCTGTTCCGTCCTTTCGGTCCTGTAAGCAGAGTCTATGTTGCCATTGATCAGAAGACTGGCATGAGCAGGGGTTTTGGATTTGTTAACTTTGTCAACAGGGAAGATGCACAAAGAGCTATCAACAAACTCAATGGATATGGCTATGACAATCTCATCCTTAGAGTTGAATGGGCAACCCCAAGGGCAAACTAA 873 0.5578 MAHQGEPTKLRWGELEEDDAEDLDFLLPPRQVIGPDENGIKKVIEYKFDEDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILIERPKPLGAKTEEPKTAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPAASDAAAAATGATKGAYVPPGMRAGAERTGGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1029 290 SUPERFAMILY RNA-binding domain, RBD 198 289 IPR035979 GO:0003676
Ssu5g1029 290 CDD RRM_eIF3G_like 210 285 IPR034240 -
Ssu5g1029 290 CDD eIF3G 38 156 IPR024675 -
Ssu5g1029 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
Ssu5g1029 290 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Ssu5g1029 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Ssu5g1029 290 MobiDBLite consensus disorder prediction 179 210 - -
Ssu5g1029 290 PIRSF Transl_init_eIF-3_RNA-bind 1 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Ssu5g1029 290 Gene3D - 168 290 IPR012677 -
Ssu5g1029 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Ssu5g1029 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Ssu5g1029 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
Ssu5g1029 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1029 Ssu-Chr5 32604034 32605944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1029 4 288 Eukaryotic Initiation Factors Gene Family AT3G11400 68.038 2.38e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1029 K03248 - gmx:100818725 550.051