Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1027 ATGAATGCGGAACCACCACCGGCGCTCCTCATGTCGGTTTCCTGCATCTCCGACTTCGACCTCCTCTGCGGCGAGGAAACCTCCGGCATCCTGTCCGGAGAGTCGCCGGAATGTTCCTCCAACCTCGATTCCTATCCTCCGCCGCCGTCTCCGCCGTCGACGACGGAGGATTATTCCATCACGAGTTTCATCGAGCACGAGCGCAACTTCGTCCCCGGATTCGAGTACCTGGCGAGGTTCCAATCTCGCTCCCTCGACGCCGACGCCAGAGGGGAATCCGTTGCATGgattctcaagGTACACGCGTATTATGGCTTTCAACCTTTGACGGCGTACCTTGCCGTCAATTATATGGATCGGTTTTTGGATTCTCGCCGGTTGCCGCAAACAAATGGGTGGCCACTGCAACTTCTATCTGTTGCATGTTTATCTTTGGCGGCAAAGATGGAGGAATCTCTGGTTCCGCCTCTCTTGGATCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAGTTACTTGTTCTGGGTGTTTTGGATTGGAGGCTAAGATCAATAACCCCACTTTGCTTCCTCGCTTTCTTTGCGTGCAAGATAGATTCAACTGCAACTTTTACCGGGCTCCTCATTTCCCGGGCTACAGAAATCATCGTATCCAATATCCAAGAGGCTAGCTTTCTTGCTTACAGGCCATCATGCATTGCAGCTGCAGCCATACTCACTGCAGCTAATGAAATTCCTAATTGGTCTGTGGTTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAATTATAGGGTGCTATCAGTTGATGCAAGAACTTGTGATTAACAATAACCGCAGGAAGCCCCCTAAAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACCCGAATGAGGTCAAGTGTCTCATCTTCCTCCTCTGCATCCTCCTTCTCATTATCTTGTAAGAGGAGGAAAATGACAAAGGAAACTCCGAgtgaagagaaaaggaacaacaataataaagaagggaagaaaaagaaaggaaataaggTGGGCCAAGTTGTCTAG 1083 0.4728 MNAEPPPALLMSVSCISDFDLLCGEETSGILSGESPECSSNLDSYPPPPSPPSTTEDYSITSFIEHERNFVPGFEYLARFQSRSLDADARGESVAWILKVHAYYGFQPLTAYLAVNYMDRFLDSRRLPQTNGWPLQLLSVACLSLAAKMEESLVPPLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSITPLCFLAFFACKIDSTATFTGLLISRATEIIVSNIQEASFLAYRPSCIAAAAILTAANEIPNWSVVKPEHAESWCEGLRKEKIIGCYQLMQELVINNNRRKPPKVLPQLRVTTRTRMRSSVSSSSSASSFSLSCKRRKMTKETPSEEKRNNNNKEGKKKKGNKVGQVV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1027 360 MobiDBLite consensus disorder prediction 327 354 - -
Ssu5g1027 360 Gene3D - 62 253 - -
Ssu5g1027 360 Gene3D - 73 190 - -
Ssu5g1027 360 MobiDBLite consensus disorder prediction 297 360 - -
Ssu5g1027 360 Pfam Cyclin, C-terminal domain 192 305 IPR004367 -
Ssu5g1027 360 MobiDBLite consensus disorder prediction 304 326 - -
Ssu5g1027 360 PANTHER CYCLINS 24 334 IPR039361 -
Ssu5g1027 360 SMART Cyclin_C_2 192 319 IPR004367 -
Ssu5g1027 360 SUPERFAMILY Cyclin-like 58 189 IPR036915 -
Ssu5g1027 360 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Ssu5g1027 360 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 24 334 - -
Ssu5g1027 360 CDD CYCLIN 96 182 IPR013763 -
Ssu5g1027 360 MobiDBLite consensus disorder prediction 33 56 - -
Ssu5g1027 360 SUPERFAMILY Cyclin-like 174 291 IPR036915 -
Ssu5g1027 360 Pfam Cyclin, N-terminal domain 60 189 IPR006671 -
Ssu5g1027 360 SMART cyclin_7 95 183 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1027 Ssu-Chr5 32511651 32514892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1027 9 345 Core Cell Cycle Gene Families AT1G70210 59.824 6.81e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1027 K18810 - gmx:100818190 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1732 2 67353323 67355131 Ssu5g1027 5 32511651 32514892 PCT