Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1019 ATGATTGTCACTCGTTCTGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACCTAAACCATGCTCACACCTCATTCCTCAAACCCACGTTGCCTTCTCTATTCAAACCTCGCCCCTTCTCTCTAACCACTCCACACCATGCACAAACCAGACCCTTTGTAAGTGCTGTTGCATCAGCATCACCATCATCACAAGGTTCCAAAGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCGTGGAGTTCACTCGGTCTCTCTGATGCCGTTTCTCGAGCACTCTCTAACATTGGCCTCAATAGACCCTCTCTTGTTCAgGCTTCTTCTGTACCGTCTGTGCTGTCAGGGAAGGATGTTATTATTGCTGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATAAGCTTAGGGACACCCAGGAACATTCTCTACATGCCGCGTCTGATCAAGAAGTGACCTCGCCACAGAAAGTTCTGCTTGTTCTTTGTCCAAATGTGCAACTTTGTGAGCAGGTGGTTAGGATGGCTAACAGTCTTTGTAGAGATGATGGTGAGACAATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACTACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAAGCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGATTTGATGAAAAACTCTTGTCTCGAACAAAAGAATCAGTAGCAGAGTCGCCAATGAAACAGGAATCTTCCTTGTCATCAGAAGATGCTtttgaaggagaagaggaaCTTCAAACTGAAGCCGCCTCTGAAGAGGATGACGATGATAAAAAGGATATTGTTGACATTAATAATGAAGCTGAATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTTGTTGCTGCTACACTTCCGGTGAATGGAAAGAAAACAGCTGGAggaatattgaaatatatgtttCCTGATGCTGAGTGGGTTTGTGGAAACTATCTTCATTGTCACAATCCAAGATTGGAGCAACAATGGATAGAAGTCACGGTTGATACTCAAGTGGACGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGATAATGCTGGAGGTATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGTCTGTTGAAGCTGTAGCAAAGATATTACTCCGATCTGGGATTGAATGTTCACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCTCAGACCTTAGTTGATTTTAACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTTGTTGATGCAGTTCGTCGGGCTGGGGAACTTGGTCAACCTGTGGAAACTGCGTTTAGCCGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAACAAAGTCACAGATTCAGCAACTATTAAAAAGAGTGTTCTAGCATGA 1758 0.4289 MIVTRSALMLHLQNPPIRYHFFSHLNHAHTSFLKPTLPSLFKPRPFSLTTPHHAQTRPFVSAVASASPSSQGSKGRDTFFAEENVSWSSLGLSDAVSRALSNIGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRDTQEHSLHAASDQEVTSPQKVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDLDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRTKESVAESPMKQESSLSSEDAFEGEEELQTEAASEEDDDDKKDIVDINNEAESVKQRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGGILKYMFPDAEWVCGNYLHCHNPRLEQQWIEVTVDTQVDELIKAVNHSFRSEDLDNAGGIHRTMVFANTVESVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFNEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGQPVETAFSRKRSFRNKLKKRGTNKVTDSATIKKSVLA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1019 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 533 IPR027417 -
Ssu5g1019 585 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 113 IPR014014 GO:0003724
Ssu5g1019 585 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 560 - -
Ssu5g1019 585 MobiDBLite consensus disorder prediction 298 322 - -
Ssu5g1019 585 SMART helicmild6 441 521 IPR001650 -
Ssu5g1019 585 Pfam Helicase conserved C-terminal domain 428 521 IPR001650 -
Ssu5g1019 585 SMART ultradead3 104 395 IPR014001 -
Ssu5g1019 585 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 376 IPR014001 -
Ssu5g1019 585 CDD DEADc 98 277 - -
Ssu5g1019 585 Gene3D - 64 373 IPR027417 -
Ssu5g1019 585 MobiDBLite consensus disorder prediction 283 326 - -
Ssu5g1019 585 Gene3D - 394 585 IPR027417 -
Ssu5g1019 585 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 52 560 - -
Ssu5g1019 585 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 569 IPR001650 -
Ssu5g1019 585 CDD SF2_C_DEAD 392 530 - -
Ssu5g1019 585 Pfam DEAD/DEAH box helicase 111 275 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1019 Ssu-Chr5 32346572 32352593 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1019 335 547 Eukaryotic Initiation Factors Gene Family AT5G11200 25.820 7.91e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1019 - - gmx:100789323 1004.97