Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g1019 | ATGATTGTCACTCGTTCTGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACCTAAACCATGCTCACACCTCATTCCTCAAACCCACGTTGCCTTCTCTATTCAAACCTCGCCCCTTCTCTCTAACCACTCCACACCATGCACAAACCAGACCCTTTGTAAGTGCTGTTGCATCAGCATCACCATCATCACAAGGTTCCAAAGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCGTGGAGTTCACTCGGTCTCTCTGATGCCGTTTCTCGAGCACTCTCTAACATTGGCCTCAATAGACCCTCTCTTGTTCAgGCTTCTTCTGTACCGTCTGTGCTGTCAGGGAAGGATGTTATTATTGCTGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATAAGCTTAGGGACACCCAGGAACATTCTCTACATGCCGCGTCTGATCAAGAAGTGACCTCGCCACAGAAAGTTCTGCTTGTTCTTTGTCCAAATGTGCAACTTTGTGAGCAGGTGGTTAGGATGGCTAACAGTCTTTGTAGAGATGATGGTGAGACAATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACTACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAAGCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGATTTGATGAAAAACTCTTGTCTCGAACAAAAGAATCAGTAGCAGAGTCGCCAATGAAACAGGAATCTTCCTTGTCATCAGAAGATGCTtttgaaggagaagaggaaCTTCAAACTGAAGCCGCCTCTGAAGAGGATGACGATGATAAAAAGGATATTGTTGACATTAATAATGAAGCTGAATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTTGTTGCTGCTACACTTCCGGTGAATGGAAAGAAAACAGCTGGAggaatattgaaatatatgtttCCTGATGCTGAGTGGGTTTGTGGAAACTATCTTCATTGTCACAATCCAAGATTGGAGCAACAATGGATAGAAGTCACGGTTGATACTCAAGTGGACGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGATAATGCTGGAGGTATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGTCTGTTGAAGCTGTAGCAAAGATATTACTCCGATCTGGGATTGAATGTTCACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCTCAGACCTTAGTTGATTTTAACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTTGTTGATGCAGTTCGTCGGGCTGGGGAACTTGGTCAACCTGTGGAAACTGCGTTTAGCCGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAACAAAGTCACAGATTCAGCAACTATTAAAAAGAGTGTTCTAGCATGA | 1758 | 0.4289 | MIVTRSALMLHLQNPPIRYHFFSHLNHAHTSFLKPTLPSLFKPRPFSLTTPHHAQTRPFVSAVASASPSSQGSKGRDTFFAEENVSWSSLGLSDAVSRALSNIGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRDTQEHSLHAASDQEVTSPQKVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDLDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRTKESVAESPMKQESSLSSEDAFEGEEELQTEAASEEDDDDKKDIVDINNEAESVKQRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGGILKYMFPDAEWVCGNYLHCHNPRLEQQWIEVTVDTQVDELIKAVNHSFRSEDLDNAGGIHRTMVFANTVESVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFNEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGQPVETAFSRKRSFRNKLKKRGTNKVTDSATIKKSVLA | 585 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g1019 | 585 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 117 | 533 | IPR027417 | - | |
Ssu5g1019 | 585 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 85 | 113 | IPR014014 | GO:0003724 | |
Ssu5g1019 | 585 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 52 | 560 | - | - | |
Ssu5g1019 | 585 | MobiDBLite | consensus disorder prediction | 298 | 322 | - | - | |
Ssu5g1019 | 585 | SMART | helicmild6 | 441 | 521 | IPR001650 | - | |
Ssu5g1019 | 585 | Pfam | Helicase conserved C-terminal domain | 428 | 521 | IPR001650 | - | |
Ssu5g1019 | 585 | SMART | ultradead3 | 104 | 395 | IPR014001 | - | |
Ssu5g1019 | 585 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 116 | 376 | IPR014001 | - | |
Ssu5g1019 | 585 | CDD | DEADc | 98 | 277 | - | - | |
Ssu5g1019 | 585 | Gene3D | - | 64 | 373 | IPR027417 | - | |
Ssu5g1019 | 585 | MobiDBLite | consensus disorder prediction | 283 | 326 | - | - | |
Ssu5g1019 | 585 | Gene3D | - | 394 | 585 | IPR027417 | - | |
Ssu5g1019 | 585 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 | 52 | 560 | - | - | |
Ssu5g1019 | 585 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 404 | 569 | IPR001650 | - | |
Ssu5g1019 | 585 | CDD | SF2_C_DEAD | 392 | 530 | - | - | |
Ssu5g1019 | 585 | Pfam | DEAD/DEAH box helicase | 111 | 275 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g1019 | Ssu-Chr5 | 32346572 | 32352593 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g1019 | 335 | 547 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 25.820 | 7.91e-12 | 65.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g1019 | - | - | gmx:100789323 | 1004.97 |