Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1017 ATGATTGTCACTCGTTCTGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACCTAAACCATGCTCACACCTCATTCCTCAAACCCACGTTGCCTTCTCTATTCAAACCTCGCCCCTTCTCTCTAACCACTCCACACCATGCACAAACCAGACCCTTTGTAAGCACTGTTGCATCAGCATCACCATCATCACAAGGTTCCAAAGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCGTGGACTTCACTCGGTCTCTCTGATGCTGTTTCTCGAGCACTCTCTAACATTGGCCTCAATAGACCCTCTCTTGTTCAgGCTTCTTCTGTACCGTCTGTGCTGTCAGGGAAGGATGTTATTATTGCTGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATAAGCTTAGGGACACCCAGGAACATTCTCTACATGCTGCGTCTGATCAAGAAGTGACCTCGCCACAGAAAGTTCTGCTTGTTCTTTGTCCAAATGTGCAACTTTGTGAGCAGGTGGTTAGGATGGCTAACAGTCTTTGTAGAGATGATGGTGAGACAATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACTACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAAGCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGATTTGATGAAAAACTCTTGTCTCGAACAAAAGAATCAGTAGCAGAGTCGCCAATGAAACAGGAATCTTCCTTGTCATCAGAAGATGCTtttgaaggagaagaggaaCTTCAAACTGAAGCTGCCTCTGAAGAGGATGACGATGATAAAAAGGATATTGTTGACATTAATAATGAAGCTGAATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTGTTGCTGCTACACTTCCGGTGA 1080 0.437 MIVTRSALMLHLQNPPIRYHFFSHLNHAHTSFLKPTLPSLFKPRPFSLTTPHHAQTRPFVSTVASASPSSQGSKGRDTFFAEENVSWTSLGLSDAVSRALSNIGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRDTQEHSLHAASDQEVTSPQKVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDLDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRTKESVAESPMKQESSLSSEDAFEGEEELQTEAASEEDDDDKKDIVDINNEAESVKQRDWRRVRKNYERSKQYILLLLHFR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1017 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 271 IPR027417 -
Ssu5g1017 359 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 269 IPR014001 -
Ssu5g1017 359 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 282 - -
Ssu5g1017 359 MobiDBLite consensus disorder prediction 298 322 - -
Ssu5g1017 359 Gene3D - 62 323 IPR027417 -
Ssu5g1017 359 Pfam DEAD/DEAH box helicase 111 273 IPR011545 GO:0003676|GO:0005524
Ssu5g1017 359 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 113 IPR014014 GO:0003724
Ssu5g1017 359 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 52 282 - -
Ssu5g1017 359 SMART ultradead3 104 336 IPR014001 -
Ssu5g1017 359 MobiDBLite consensus disorder prediction 283 328 - -
Ssu5g1017 359 CDD DEADc 98 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1017 Ssu-Chr5 32285768 32287735 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1017 74 270 Eukaryotic Initiation Factors Gene Family AT3G13920 24.880 9.87e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1017 - - ccaj:109797503 592.808