Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1016 ATGGTGTTTGCCAACACTGTTGAGTCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGGATTGAATGTTCACATTATCATAAGAATTGCACATTGGAAGAGCGAGCTCAGACCTTAGTTGATTTTAACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTTGTTGATGCAGTTCGTCGGGCTGGGGAACTTGGTCAACCTGTGGAAACTGCGTTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAGAAGAGGGGTACTAACAAGTCACAGATTCAGCAACTATTAAAAAGAGTGTTCTAG 462 0.4264 MVFANTVESVEAVAKILLRSGIECSHYHKNCTLEERAQTLVDFNEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGQPVETAFSRKRSFRNKLKKRGTNKSQIQQLLKRVF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1016 153 Gene3D - 1 152 IPR027417 -
Ssu5g1016 153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 139 IPR001650 -
Ssu5g1016 153 CDD SF2_C_DEAD 1 100 - -
Ssu5g1016 153 ProSiteProfiles SecA family profile. 1 153 IPR014018 -
Ssu5g1016 153 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 135 - -
Ssu5g1016 153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 110 IPR027417 -
Ssu5g1016 153 SMART helicmild6 11 91 IPR001650 -
Ssu5g1016 153 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 1 135 - -
Ssu5g1016 153 Pfam Helicase conserved C-terminal domain 1 91 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1016 Ssu-Chr5 32281726 32284379 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1016 1 117 Eukaryotic Initiation Factors Gene Family AT5G11170 32.773 1.34e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1016 - - ccaj:109788061 269.626