Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1010 ATGGACTCTGACAGCATCGTTTCTCGGCCAAGGATGCTGGAAAACATCGACGGTTTTGGTTTCTCACCGGCGGAATCCGAAGAGGTTCACGTTTTAGCCGTTGATGACAGCCTCGTTGATCGCAAGGTCATCGAGCACTTGCTCAAAGTCTTAGCTTGTAAAGTTACTGCTGTGGATAGCGGACTGAGAGCACTCCAATTTCTTGGACTAGACGAGCAGAAAATGCCCTCTGAAACTAATGGTTTTGTTCAGGGTTTAAAGGTGGATCTAATTATCACAGACTATTGTATGCCCGGAATGACCGGTTACGAGCTGCTCAAGAAAATTAAGGAATCGTCCACTTTCAAGGAAATTCCTGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAGGGTGCAGAGGATTTCATAGTGAAGCCGGTGAAGTTATCTGACGTGAAACGTTTGAAGGATTACATGACAACGAAGGAGGTTAGGGATGGAAACCAAGGCAGGGAAGGGATCAACAAAAGGAAGCTATTAGACACCTCTGGTgtgtcatcatcatcatcaccaccgTCCATTTCCTCATCCTTACTTCCATCTTCACCCTCGGTGATTGACTCTCCAATCAGACGGCTTAAAATGACCAGCACTGATTGA 663 0.4419 MDSDSIVSRPRMLENIDGFGFSPAESEEVHVLAVDDSLVDRKVIEHLLKVLACKVTAVDSGLRALQFLGLDEQKMPSETNGFVQGLKVDLIITDYCMPGMTGYELLKKIKESSTFKEIPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEVRDGNQGREGINKRKLLDTSGVSSSSSPPSISSSLLPSSPSVIDSPIRRLKMTSTD 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1010 220 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 205 IPR045279 GO:0009736
Ssu5g1010 220 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Ssu5g1010 220 SUPERFAMILY CheY-like 29 156 IPR011006 -
Ssu5g1010 220 CDD REC_typeA_ARR 31 156 - -
Ssu5g1010 220 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Ssu5g1010 220 MobiDBLite consensus disorder prediction 181 205 - -
Ssu5g1010 220 SMART REC_2 29 160 IPR001789 GO:0000160
Ssu5g1010 220 MobiDBLite consensus disorder prediction 167 220 - -
Ssu5g1010 220 Gene3D - 29 193 - -
Ssu5g1010 220 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 9 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1010 Ssu-Chr5 32062404 32063538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1010 23 211 Response Regulator Gene Family AT1G59940 63.492 6.56e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g1010 Response_reg 4.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1010 K14492 - gmx:100527828 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1695 2 66237196 66238454 Ssu5g1010 5 32062404 32063538 PCT