Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1008 ATGGCTTCCTATAAGATTCTCTTCCTCGTTATCCTTGTTAGCTTCCTCAGCTTTGAAACTACTCAGGCAAATGACATCACACCACTACCAAGACCTGACGCAACAGAGCCTTCCCCTACCGCCACCGCCACTGactatttatacataaattgcTCCAGTGACGAAACCATTGCCGGCAGTGCCTTCCAAATCAACCTTCAGACTCTCCTCTCTTCGTTATCATCCAACGCCGCCAGCAACACCGGATTCTACAAAACCACAGTCGGTGGAGAAAACCCCTCGGACTCGGTCTTTGGACTGTTCATGTGCAGGGGTGACGTCCCTCCTCAGCTTTGTCAACTGTGTGTCCAAAATGCAACCAAGCAACTAACCACAGTTTGCTCCTTGTCCGAACAATCTCTGATTTGGTACGATGAGTGCACGGTTCGTTATTCCAACCGCTCATTCTTCTCCACCGCGGACACAAGGCCTAGATATGCTCTGTCCAACACTGCCAACATCTCAAACGAGGAAAGCTTCAGGCGTTTATTGTTTTCGACCATAAACAAAACTGCAGATGAAGCAGCTCGTACCGTTAATCCTCTAGGTGACAAGAAATTTGCGACGAGGCAGGCAAACGTGTCTGGATTACAGAGGCTTTATTGTCTAGCTCAGTGCACTCCGGACCTGTCACCCCATGATTGCAGAACCTGTCTCGATGGAGCCATAGGGGACCTTCCATGGTGCTGTGAAGGGAGACAGGGAGGGAGAATTCTCTATCCCAGCTGTAATGTTAGGTATGAATTGTACCCTTTCTACCGCTCCACTGCTCCCTCACCTACGCCTACACCAACCCGGGTTCCTGCATCAAATTTTTCGGACGCAGATTCACGATTTTCCGAAGTTCCAACTTATCTACACCACAATTGCTCAACTGACGTAGCTGCTGACAGCGCCTTCAAAATGGATCTTAAGACCCtcctctcttacttgtcttccAATGCCACCAATGGCAACAAATCTTATTATAAGGACAGTGTGGACAACAGTTTGTATGGCCTCTTCATGTGCCGCGGTGACCTTCCCTCTCGCCTCTGTCAACAATGCGTCCTAAACGCAACCCACCGAATATCCTCAGAGTGCAATTCCTTTCAAGAGGCTATAATTTGCTCCATCCCCGGCCAAGACTTCTTCACTTTCACATTATCAAACACGTTAGCCAGTCTGGCGGAGGCGACAGGGGATACTACTGAGAGATATGGGACTAAATCATTAAAACTGAATGATTTACAAACCCTTTACACTCTTGGTCAATGTACGCAGGATTTGTCTAGTGATGACTGTAAGGGCTGTCTGGGCGACATAAATGGAAAAATTCCATGGTCAAGCTTGGGAAGCGTAGGGGGAAGAGTTCTATATCCGAGCTGCAATCTCAGGTTTGAATTGTTCCAATTTTATAGAGGTGATGACAAAGCTCAACCGCCAAGGCAGGGTAATCCCCTGGGTAATCCTCCTCCGTCAGGCCTTAAAGTGGCACTCTTCTCTTTTGGCTACTACTTGATaaagagaaaagcaaaaaagagtGTGAAGACTATTCTTAGAGAAAATTTTGGTCATGAAAGTGTAGCCTTAGAGCCATTGCAATTCAATTTGACTGTAATTGAAGCAGCAACCAATAACTTTTCCGATGAGAATAGGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTCTTGATGGACGACAAGTAGCAGTAAAGAGACTCTCAAAAAGCTCTAAGCAAGGTGCAAATGAGTTCAAGAATGAAGTTTTATCGATAGCCAAGCTTCAACACAGAAATCTTGTGGCATTCATTGGTTTTTGTCTTGAAGAGCAAgacaaaatacttatttatgaatatGTGCCTAACAAGAGCcttgactattttttatttgATTCTCAACGACCAAAGTTGTTAAGCTGGTTTGAACGTTACAATATTATAGGAGGGATTGCTCGAGGAATTCTTTATTTACATGAACATTCTCGACTCAAAGTCATACACCGTGATCTCAAACCTAGTAATGTtttattagatgaaaatatgattccaaaaatttcagattttggtTTGGCtagaattgttaaaataaatcaagaccGGGGGAGTACAGATAGAATTGTTGGAACATAtggTTATATGTCTCCAGAATATGCAATGCTTTGA 2193 0.4204 MASYKILFLVILVSFLSFETTQANDITPLPRPDATEPSPTATATDYLYINCSSDETIAGSAFQINLQTLLSSLSSNAASNTGFYKTTVGGENPSDSVFGLFMCRGDVPPQLCQLCVQNATKQLTTVCSLSEQSLIWYDECTVRYSNRSFFSTADTRPRYALSNTANISNEESFRRLLFSTINKTADEAARTVNPLGDKKFATRQANVSGLQRLYCLAQCTPDLSPHDCRTCLDGAIGDLPWCCEGRQGGRILYPSCNVRYELYPFYRSTAPSPTPTPTRVPASNFSDADSRFSEVPTYLHHNCSTDVAADSAFKMDLKTLLSYLSSNATNGNKSYYKDSVDNSLYGLFMCRGDLPSRLCQQCVLNATHRISSECNSFQEAIICSIPGQDFFTFTLSNTLASLAEATGDTTERYGTKSLKLNDLQTLYTLGQCTQDLSSDDCKGCLGDINGKIPWSSLGSVGGRVLYPSCNLRFELFQFYRGDDKAQPPRQGNPLGNPPPSGLKVALFSFGYYLIKRKAKKSVKTILRENFGHESVALEPLQFNLTVIEAATNNFSDENRIGKGGFGEVYKGILLDGRQVAVKRLSKSSKQGANEFKNEVLSIAKLQHRNLVAFIGFCLEEQDKILIYEYVPNKSLDYFLFDSQRPKLLSWFERYNIIGGIARGILYLHEHSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVKINQDRGSTDRIVGTYGYMSPEYAML 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1008 730 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 37 276 - -
Ssu5g1008 730 ProSiteProfiles Gnk2-homologous domain profile. 155 265 IPR002902 -
Ssu5g1008 730 Gene3D Transferase(Phosphotransferase) domain 1 630 730 - -
Ssu5g1008 730 SUPERFAMILY Protein kinase-like (PK-like) 535 729 IPR011009 -
Ssu5g1008 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672|GO:0006468
Ssu5g1008 730 Pfam Protein kinase domain 555 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1008 730 Gene3D Phosphorylase Kinase; domain 1 515 629 - -
Ssu5g1008 730 ProSiteProfiles Protein kinase domain profile. 554 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1008 730 ProSitePatterns Protein kinases ATP-binding region signature. 560 582 IPR017441 GO:0005524
Ssu5g1008 730 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 290 374 - -
Ssu5g1008 730 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 502 730 - -
Ssu5g1008 730 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 381 486 - -
Ssu5g1008 730 Pfam Salt stress response/antifungal 391 474 IPR002902 -
Ssu5g1008 730 Pfam Salt stress response/antifungal 306 382 IPR002902 -
Ssu5g1008 730 Pfam Salt stress response/antifungal 51 146 IPR002902 -
Ssu5g1008 730 Pfam Salt stress response/antifungal 166 263 IPR002902 -
Ssu5g1008 730 Gene3D - 42 149 IPR038408 -
Ssu5g1008 730 Gene3D - 386 478 IPR038408 -
Ssu5g1008 730 Gene3D - 296 385 IPR038408 -
Ssu5g1008 730 Gene3D - 155 265 IPR038408 -
Ssu5g1008 730 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 276 - -
Ssu5g1008 730 ProSiteProfiles Gnk2-homologous domain profile. 44 149 IPR002902 -
Ssu5g1008 730 SMART serkin_6 554 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1008 730 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 290 374 - -
Ssu5g1008 730 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 502 730 - -
Ssu5g1008 730 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 381 486 - -
Ssu5g1008 730 ProSiteProfiles Gnk2-homologous domain profile. 373 478 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1008 Ssu-Chr5 31970138 31975751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1008 296 729 Receptor kinase-like Gene Family AT4G05200 41.683 6.12e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g1008 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1008 - - gmx:100798426 1031.55