Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1007 ATGGCTTTGAATACGATGCTTCAATCATGCCCTCTTGTGATCCTTGCTTTTGTGTTACTTTTACAAAGTTTGTCAATACCAACATGTCGTTGCCAAACCAGCAATTCTCCTCCTCAGAACATTGAAACTTTCTATCCAAATGAAACTTCAGCACCAGTCCCAGCAACACAACAACCTGAGCCACCACCACagccacaaccaccaccaccactaccaacTGCTAACGTAGCACCCAAAAGTGGTTCATCAAATGGTAAGATAGCAAAGGCGGTGGCTGCAACTGCAGCTACCTCTATAGTTGTTTGtggtttaattttcattttggttcaaAGGTGCTTAAGggcaagaaagagaaagagagaggagatAAGTAACACTGCTTCTGGGGGAGATACCCGTGTTGTGCCTCAGGGAAATGTGTTTGAGAGAATTGATGGAAATGTGAGGGGATTAATTGTTGATGAGGATGGCTTGGATGTGATTTATTGGAGAAAGCTTGAAGGGAAAAACTCTAACAAGAATCTTCACAAGGAGGTCTTGAGTAGtcccaaaaacaaagaaaaagaagatgaagaagatggTCGCGATGAAAATCAAGTGAAAAAATCCAAGTCCATCCAAGAAATTCCTCTGCTTAGAGGGAAATCTTCAACTTCCCACTTAAATGTATCTCCAGAAGAGGATGAGCCATATAGATTTTCACCACTTCAttcacctcctcctcctcctcctcctgcTTCTGCTTCTGCTCCTGTTTCTGCTCCTACTACCTCTAGTCTTCCTGCATCAGTTGGGGTTGTTATCAAGGATGTTCAGAAACCAGACTCTCCAATTCAACCATCAACTCCACCCCCTCCAGTTTCACCATCAACACCATCTTCCACTTCTTTTGCAGCAGTTCCAAAACCGAATAATCCTGCGCCATCCCCTCCCCCTCCCCCAATCCCAGCTAGAAGGAATCCAgcaccacctcctcctccaccatCATCAAAAACACCACCTGCTCCCATTGAAATGCCAGCTATTAAGCAAAGAAACTCTTCAGGAAAAGGCATGCCAGAAACCAGCAATGATCAAGTGAAGCTGAAGCCTTTGCATTGGGATAAAGTGAATACTAATACTGCTGATCACTCCATGGTTTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTCATGGAAGCTCTCTTCGGTTATGTCGCAACCAACCGAAGATCTCCCAAAGGAAAGACTCACTCAGCCATTCCAAGCAAGGATGCCTCAGCTCCATCAGCAAAAACCTTCCTTCTTGACCCCAGAAAATCACAGAACATTGCTATTGTTCTGAAATCTCTTGCAGTCTCACAAGGAGAAATTCTTGATGCACTCACTGATGGTAAGGGCCTCAATGCAGATACCATTGAAAAGCTGGCTAGAGTTTCCCCAACAGAAGAAGAGCAATCTCTTATCTTTCAATACAAAGGAGACCCAGCAAGACTTGCAGCAGCTGAATCTTTCCTTTATAACATCCTCAAAGCTGTTCCTTCAGCTTTTAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCCGAgattcaagaaatcaaagaatCTCTGCAGACCATTGAACTGGGGTGTGAGGAGCTTAAAAGCAAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCAGGAAACCGAATGAATGCAGGAACTACAAGAGGTAATGCTCAAGCTTTCAATTTGGCTTCTCTAAGGAAGCTCTCTGATGTCAAGAGCACCAATGGAAAGACCACATTACTTCACTTTGTTGTTGAAGAAGTAGTCCGTTCTGAGGGAAAACGGGTTGCTCTTAACCGCAATGGCAGCCTGAGTAGTAGCAGCGGTAGGAGCAGCAACAGCAATGGAAACTACGAGAACAATGCTGCTTCAAATGAACTGATAGAAAGGGAATATGTAACACTAGGATTGCCAGTTGTAGGAGGGATCAGTTCTGAGTTATCCAATGCAAAGAAAGCAGCACAAATAgattataacaatttaattggttcaatCTCAGCCCTCTCAACCCGGTTAGTTGGAATTCAAGAACTTGTTTCCTTGTGTGGAAATGGTGAAGGAGGATATTTTGTGAAAGAAATGGATTATTTTCTTGGAAATGCTGAGGAAGAGTTGAAATTAGTGAAGGAGAAGCAAACAAGTGTGTCGCAGCTTATCAAGAAAACAACACAATATTATCAAGGAGGAGCTTCAAAAGAGACTGCAGAAGACAATCTCCAATTGTTTGTCATAGTGAAAGATTTTCTGGGAATGGTTGATCAAGCTTGCATTGAGATTGCACGTGACATGCAAAAGAGGAATCCTCCCAAGGCAATTTCTGGGTAA 2382 0.3963 MALNTMLQSCPLVILAFVLLLQSLSIPTCRCQTSNSPPQNIETFYPNETSAPVPATQQPEPPPQPQPPPPLPTANVAPKSGSSNGKIAKAVAATAATSIVVCGLIFILVQRCLRARKRKREEISNTASGGDTRVVPQGNVFERIDGNVRGLIVDEDGLDVIYWRKLEGKNSNKNLHKEVLSSPKNKEKEDEEDGRDENQVKKSKSIQEIPLLRGKSSTSHLNVSPEEDEPYRFSPLHSPPPPPPPASASAPVSAPTTSSLPASVGVVIKDVQKPDSPIQPSTPPPPVSPSTPSSTSFAAVPKPNNPAPSPPPPPIPARRNPAPPPPPPSSKTPPAPIEMPAIKQRNSSGKGMPETSNDQVKLKPLHWDKVNTNTADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRRSPKGKTHSAIPSKDASAPSAKTFLLDPRKSQNIAIVLKSLAVSQGEILDALTDGKGLNADTIEKLARVSPTEEEQSLIFQYKGDPARLAAAESFLYNILKAVPSAFKRLNAMLFRLNYDSEIQEIKESLQTIELGCEELKSKGLFVKLLEAVLKAGNRMNAGTTRGNAQAFNLASLRKLSDVKSTNGKTTLLHFVVEEVVRSEGKRVALNRNGSLSSSSGRSSNSNGNYENNAASNELIEREYVTLGLPVVGGISSELSNAKKAAQIDYNNLIGSISALSTRLVGIQELVSLCGNGEGGYFVKEMDYFLGNAEEELKLVKEKQTSVSQLIKKTTQYYQGGASKETAEDNLQLFVIVKDFLGMVDQACIEIARDMQKRNPPKAISG 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1007 793 MobiDBLite consensus disorder prediction 210 224 - -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 40 83 - -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 55 75 - -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 303 335 - -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 234 250 - -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 40 54 - -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 619 639 - -
Ssu5g1007 793 Gene3D Formin, FH2 domain 373 790 IPR042201 -
Ssu5g1007 793 PANTHER FORMIN-LIKE PROTEIN 1 790 - -
Ssu5g1007 793 PANTHER FORMIN-RELATED 1 790 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu5g1007 793 ProSiteProfiles Formin homology-2 (FH2) domain profile. 352 793 IPR015425 -
Ssu5g1007 793 Coils Coil 530 550 - -
Ssu5g1007 793 SMART it6_source 349 786 IPR015425 -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 174 365 - -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 277 291 - -
Ssu5g1007 793 SUPERFAMILY Formin homology 2 domain (FH2 domain) 365 783 - -
Ssu5g1007 793 Pfam Formin Homology 2 Domain 356 771 IPR015425 -
Ssu5g1007 793 MobiDBLite consensus disorder prediction 174 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1007 Ssu-Chr5 31932371 31934850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1007 12 792 FH2 protein (formin) Gene Family AT1G70140 43.429 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1007 - - gmx:100783219 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1694 2 66206596 66209111 Ssu5g1007 5 31932371 31934850 PCT