Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1002 ATGAAGAGGTCTAGGGATGATGTTTACATGAGTTCACAACTCAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGACTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTGGCATATCTCAAGGCAGTAAAGGACATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCCTGCCAAAGGGATATGAAATTACACTTCCATCAGAGGATGAACAACCTCCCCAGAAGAAACCCGTTGAATTTGCGGAAGCCATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGACCGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGGAAGGAAACCAAGTCTATCACTGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGATCACCCTCTACACACTATGCTTCTGCTCGAAATTCTCTTCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGGACCATAGCTTCACCTGGTGATCATGACCTCAATGCTGACCATCCCAATCCAGAACTTGACAGATGTTTGATGAGGGCTGATAAGGATCAGAGAAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAGAGAGACGGGAGACAACGGGACAGTGATGATAGAGACTATGATCATGATGGTAGTAGGGAGCATTTATCTCACAAGCGGAAATCTGGTTGTAGGGCCGAAGACTCTGGTGCTGAACCATTGCATGATACTGACAAAAATTTTGGCATGCACCCTATCTCATCTGCATGTGAGGATAAAAGTTCTTTGAGAAGTATGTATAGTCCGATGCTTTACGTTGACAAAGTGAAGGAGAAATTACAAAACCCTGATGATTTCCAAGAATTTTTGAAGTGCCTACATATCTACAGCAAGGAAATAATTGCCCGACATGAATTGAAATCATTGGTGGGCAATTTACTGGGAAAATATGCAGATATTATGGAGggatttgatgaatttttggCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGCCTATTGAATAAAAAGTCCTTTTGGCATGAAGGACATGGACCAAAACCAATGAAGGTAGAGGACAGGGATCAAGATCGTGATAGGGATGTCGGGATGAAAGAAAGGGATCGTGAATGCCGAGAGAGGGACAAATTGAATGCAACTGTTAACAAGGATGTTTCAGTTCCTAAGATGTCTCTGTATGCCAGCAAGGATAAGTATGCAGCAAAACCTATAAGTGAGCTGGACCTTTCTAACTGTGAACAATGCACTCCCAGTTACCGTCTTCTACCAAAAAATTACCCAATTCCGTCTGCTAGTCAGAAAACAGAACTTGGGGCAGAGGTATTGAATGATCACTGGGTTTCTGTTACGTCTGGCAGTGAGGACTATTCCTTTAAACACATGCGCAAAAATCAATATGAGGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTATTGGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAAGAGCTCTTGGACAAGATTAATGCTAATACAATTAAGGGAGACAGTTCAATTTGTATTGAGGAGCATTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCtgattttaataaagtttgggCTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCCTGAGCactaaagTCTTACTGGcagaaatcaaagaaattagtGAGAAGAAACGTAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTATTATTCCTCACTTGGAATTTGTGTATCCTGATCCGGAGATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAATGTGTACAACTGAACAGCTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCATACTTGGTGCTCCTTCTCGACCCCAAGGTCCGGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGCCAAAAGTGGCACTGCGATTGCCAATGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACACTAATAGAAATGGGGAGGAGATTGTTCCATCAGAACAATCAAATTCCTGCAAACAATGGCAAACAAGTGGGGATAATAAGgttaaaaaggataattatcTTGATTCAGACCGCTCTGCACATAAGACTGAAAACTTGGGCAGTAGTACACAGCAgggtaaaatgtatataaatgtcTCCATGCCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGCTAATGTCTCACTGTCCTCTGGCAAAATGGAGCAAAGTAATAGAAGAACGAATGTGTATAATGCATCAGGACTTACTGCTACTCCTCCATCAAGACCTGGTAATGTCTCTAGTGAGGGAGATTTACCTTCATTAGAGGGTGCTGATTCTACAAGACCAGTTACATCCACAAATGGGGCCACCATTGAGGACACTAAAGTTCACAGATATCATGAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAGGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAGGATAACTATGCAGTTTATGGACATGCTGGTTTGGAGGCAGTGCATAAAGGAAAAGATGGTACCATTTGTCGACAATACCAAAATAGACATGGGGAAGAAGTTTGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGAGAAGAAAGTCCCCATAGATCATTGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACTGAGTCTGCTGATGCTGAGGAGTGTTCTCGAGAAGAACATGAGGAGGGTGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGTGTCTCATTGCCATATTCAGAGCGCTTTCTTGTCACTGTAAAGCCTCTGGCAAAACATGTTCCCCCAGTGTTGCATGAGAAAGAAAGGGCTGTTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCTGCAAAGGTTAACTCATCATCTGCTGAAAGAAAGTGGAGGGCTTCAAATGATACAAGCTCTACTGATCAATATGGCAGGTTTATGAACGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGCCGGGCTATTATTGGAACTCAGTCATATGTCTTATTCACTTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAACAAGCTTCTTCAACTATATGcatatgaaaaatcaagaaaaccTGGAAGATTCGTTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATgtTCACCTACACCTACCCAATTGTCTATTCAACTGATGGACTATGGATATGATAAGCCTGAAGTGACTGCTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTATTGTCCCTGACAAAAAGGAGAAGTCAGGAATTTACCTAAATAGGAATAAGCGCAAGTATGCCAGTAATGATGAATTTTCAAGCCAGACCATGGATGGACTACAAATTATCAATGGTCTAGAGTGTAAGATATCTTGCAATTCATCTAAGGTTTCATACGTTTTAGATACTGAAGACTGTTTATATCGAACAACAAGAAAAAGGAGAACCTTGCATCACAGCAATTCCTGCCATGAACAGGCAAAGTCCTCAATAATTTGTTCAAGCAGAGTACAGCGGTTCTGcaaattgttttcaatttga 4251 0.3976 MKRSRDDVYMSSQLKRPMVSSRGEPSGQPQMMTGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPSEDEQPPQKKPVEFAEAINFVGKIKTRFQGNDRVYKSFLDILNMYRKETKSITEVYQEVAALFQDHADLLEEFTHFLPDTSGSPSTHYASARNSLLRDRSSAMPTVRQMHVEKRERTIASPGDHDLNADHPNPELDRCLMRADKDQRRRGEKEKDRREERDGRQRDSDDRDYDHDGSREHLSHKRKSGCRAEDSGAEPLHDTDKNFGMHPISSACEDKSSLRSMYSPMLYVDKVKEKLQNPDDFQEFLKCLHIYSKEIIARHELKSLVGNLLGKYADIMEGFDEFLAQCEKNEGFLAGLLNKKSFWHEGHGPKPMKVEDRDQDRDRDVGMKERDRECRERDKLNATVNKDVSVPKMSLYASKDKYAAKPISELDLSNCEQCTPSYRLLPKNYPIPSASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLDKINANTIKGDSSICIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPILGAPSRPQGPEDTEDVVKAKNNSAKSGTAIANGDGSPVMNPKNLNTNRNGEEIVPSEQSNSCKQWQTSGDNKVKKDNYLDSDRSAHKTENLGSSTQQGKMYINVSMPDEVSRANKQDHSIERLVNANVSLSSGKMEQSNRRTNVYNASGLTATPPSRPGNVSSEGDLPSLEGADSTRPVTSTNGATIEDTKVHRYHEESVGHFKSEREEGELSPNGDFEEDNYAVYGHAGLEAVHKGKDGTICRQYQNRHGEEVCGEAGGENDADDEGEESPHRSLEDSENASENGDVSGTESADAEECSREEHEEGGDHEHDNKAESEGEAEGMADANDVEGDGVSLPYSERFLVTVKPLAKHVPPVLHEKERAVRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAERKWRASNDTSSTDQYGRFMNALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRKPGRFVDIVYHENARVLLHDENIYRIECSPTPTQLSIQLMDYGYDKPEVTAVSMDPNFSAYLHNDFLSIVPDKKEKSGIYLNRNKRKYASNDEFSSQTMDGLQIINGLECKISCNSSKVSYVLDTEDCLYRTTRKRRTLHHSNSCHEQAKSSIICSSRVQRFCKLFSI 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 423 447 - -
Ssu5g1002 1416 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Ssu5g1002 1416 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Ssu5g1002 1416 Pfam Paired amphipathic helix repeat 356 399 IPR003822 GO:0006355
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 193 214 - -
Ssu5g1002 1416 SUPERFAMILY PAH2 domain 340 402 IPR036600 GO:0006355
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 831 849 - -
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 1 37 - -
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 14 37 - -
Ssu5g1002 1416 SMART hdac_interact2seq4b 490 590 IPR013194 -
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 788 861 - -
Ssu5g1002 1416 Pfam Sin3 family co-repressor 492 584 IPR013194 -
Ssu5g1002 1416 ProSiteProfiles PAH domain profile. 330 402 IPR003822 GO:0006355
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 908 925 - -
Ssu5g1002 1416 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 951 974 - -
Ssu5g1002 1416 Coils Coil 559 579 - -
Ssu5g1002 1416 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 800 830 - -
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 1016 1096 - -
Ssu5g1002 1416 Gene3D Paired amphipathic helix 335 404 IPR036600 GO:0006355
Ssu5g1002 1416 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1394 - -
Ssu5g1002 1416 PANTHER SIN3B-RELATED 1 1394 IPR039774 GO:0003714
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 908 983 - -
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 193 324 - -
Ssu5g1002 1416 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Ssu5g1002 1416 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 221 317 - -
Ssu5g1002 1416 Pfam C-terminal domain of Sin3a protein 1131 1377 IPR031693 -
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 936 950 - -
Ssu5g1002 1416 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 1056 1084 - -
Ssu5g1002 1416 MobiDBLite consensus disorder prediction 1029 1043 - -
Ssu5g1002 1416 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1002 Ssu-Chr5 31860575 31872996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1002 28 119 WRKY Transcription Factor Family AT4G12020 60.638 4.13e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g1002 Sin3a_C 1e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1002 K11644 - gmx:100781798 2380.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1688 2 66125525 66137054 Ssu5g1002 5 31860575 31872996 PCT