Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1001 ATGAAGAGGTCCAGGGATGATGTTTACTCGAGTTCACAACTCAAAAGGCCCATGATGTCTTCTAGAGGAGAACACTCGGGGCAACCACAGATGACGAGTGGTGGTGGTCAGAAACTAACCACAAAGGATGCCTTGGCATATCTGAAGGTAGTAAAGGACATTTTTCAAGATGAGAGTGAAAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAATAGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAACACCTTTTTGCCAAAGGGATATGAAATGAAACTTTCATTGGAGGATGAACAACCTCCCCAGAAGAAGCCCATTGAATTCACAGAAGAAGCCATAAATTTCAAGATGACGGTTGCTGCACTTTTCCAGGGCCATGCAGATCTTCTTGAGGAGTTTACTCATTTTGTTCCTGATACTTCAGGAACAGATTCTACTCACCATGCTTCTGCTCGAATTTCTCTCCTTTGTGATAGGAGCTCTGCAATGCCAACGAGAGAAAGGACCATAGCTTCACATGGTGATCGTGACCTCAGTGCTGACCATCCTGATCCAGAACTTGACAGGTGTTTGATAAAGGCTGATAAGGATCAGAGGAGTGGCGTGAAGGAAAAGGACTGTAGAGAAGAGAGAGACAGGAAACAACAGAAAAGGGATGATAGAGATTGTGATCATGATGGAAGTAGGGAGGGTTTATCTCGCAAGCGGAAATCTGGTTGCAGGGCTGAAGACTCTGGTGCTGAACCATTTCATGATACTGCTGAAAATTTTGGCATGCAACCTATGTCATGTGCTTGTGAGGATATAATTTCAAGTATGTGTAGTCCGGTGCTTGGTTACCTTGAAAAAGTCAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTCAAGTGCCTACTTATCTACAGCAAGGAATTAATTACCCAACATGAATTGCAATCATTGGTGGGCAATTTACTGGGAAAATATGCAGATCTTATGGAGggatttaatgaatttttggcTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTCCTGAAAAAAAAGTCCTTTTGGTACGAAGGACATGGACCAATTTCGATGAAGGAAGAGGACAGGGATCAAGATCATGATAGGGATGACGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGGGACAAATCCAATGCAACTGATAACAAGGATGTGTCAGTTCCTAAGATGTCTCTGTATGCCAGCAAGGATAAGTATGCAGCGAAACCTATAAGTGAGCTGGACCTTTCTAACTGTGAACAATGCACTCCAAGTTACCGACTTCTACCAAAAAACTACCCAATACCTCCAGCTAGCCAGAGAACAGAACTTGGTGCAGAGGTATTGAATGATCAGTGGGTTTCTGTTACTTCTGGCACTGGCAGTGAGGACTTTTCCTTTAAACACATGAACAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGATTGAACTTGATATGTTGTTAGAGTCTGTAAATGCGACAACTAAACGAGTTGAAGAGATCTTAGACGAgattaatgataatataattaaaggataCAGTCCAATTAGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAACGAATATATGGGGATCATGCGCTTGATGTAATGGATGTGCTAAACAAGAATGCATCTTTAGTTTTGCCAGTCATATTAACCCGCTTGAGGCAGAAACAGGATGAAATGGCAAGGTGCTGTACTGATTTTAATAGAGTTTGGGCTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAAGATACAAAAAGCTTGAGCACTAAAGCCTTACTGGcagaaatcaaagaaattagagagaagaaacataaagaaaatgatGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTATTATTCGTCACTCGGAATTTGTGTATCCTGATGCGGAGATTCATGAAGATGGTCCTGAAGATACAGAAGATGTTGTCAAGGTGAAAAATAATTCTGCCAAAAATGGCATTGCAATTGCCAAGGGTCATGGTAGTCCTGGTGTTGGATCTACCATAATGAATCCCAAGAATTTAAACACCAATAGAAATGGGAATGAGAGTGTTCTGTTAGAACAATCAAATTCCTGCAAACAATGGCAAACAAATGGGGATAATAAGGTTGAAGAGGATAATTATCTTGATTCAGACCGCTCTGCACATAAGACTGAAACCTTAGCCAGTAGTACACAGCTGGGTAAAATGCATATAAATGCATCCATTCCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGCTAATGTCTTTCTGTCCTCTGGCAAAATGGAGCAAAGTAATAGAAGAACGAATGTGGATAATGCATCAGgACTTACTGCTACTCCTCCATCAAGACCTGGTAATGTTTCTAGTGAGGGAGGACTTGATTTACCTTCATTAGAGGAGACATCATCACTATCTATCTCACAAGGGCAAGTTGTTGATCACAACCCCAATGATATTCTTGGTAGATCCTTGAATGTCCCTGACCACCCAGACCGTGTTAGGGGAGTGGGATTTGGAGCGACACAGAAGACTTATGTCTCACCCCAACAAAGGTCAGAATCTATTACGTACGAGGAAATGCAGCAAATGAGGAAGGAGATGCATGATGAGCTAATGGAAGAAATGAAGGACTTGGACGACCTCAAAAAGCAAGTGGCCAAGTTGGAAATGCGGATGCAAATGCAAATGAACAAGGAGCCACAGGTAGAAGGTCTGGGTGGCCCCAAGTGGTAG 2910 0.4069 MKRSRDDVYSSSQLKRPMMSSRGEHSGQPQMTSGGGQKLTTKDALAYLKVVKDIFQDESEKYDDFLEVMKDFKAQRIDTIGVIARVKELFKGHRDLILGFNTFLPKGYEMKLSLEDEQPPQKKPIEFTEEAINFKMTVAALFQGHADLLEEFTHFVPDTSGTDSTHHASARISLLCDRSSAMPTRERTIASHGDRDLSADHPDPELDRCLIKADKDQRSGVKEKDCREERDRKQQKRDDRDCDHDGSREGLSRKRKSGCRAEDSGAEPFHDTAENFGMQPMSCACEDIISSMCSPVLGYLEKVKEKLRNPEDYQEFFKCLLIYSKELITQHELQSLVGNLLGKYADLMEGFNEFLAQCEKNEGFLAGLLKKKSFWYEGHGPISMKEEDRDQDHDRDDGMKERDRECRERDKSNATDNKDVSVPKMSLYASKDKYAAKPISELDLSNCEQCTPSYRLLPKNYPIPPASQRTELGAEVLNDQWVSVTSGTGSEDFSFKHMNKNQYEESLFRCEDDRIELDMLLESVNATTKRVEEILDEINDNIIKGYSPISIEEHLTALNLRCIERIYGDHALDVMDVLNKNASLVLPVILTRLRQKQDEMARCCTDFNRVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEIREKKHKENDVLLAIAAGNRQPIIRHSEFVYPDAEIHEDGPEDTEDVVKVKNNSAKNGIAIAKGHGSPGVGSTIMNPKNLNTNRNGNESVLLEQSNSCKQWQTNGDNKVEEDNYLDSDRSAHKTETLASSTQLGKMHINASIPDEVSRANKQDHSIERLVNANVFLSSGKMEQSNRRTNVDNASGLTATPPSRPGNVSSEGGLDLPSLEETSSLSISQGQVVDHNPNDILGRSLNVPDHPDRVRGVGFGATQKTYVSPQQRSESITYEEMQQMRKEMHDELMEEMKDLDDLKKQVAKLEMRMQMQMNKEPQVEGLGGPKW 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1001 969 MobiDBLite consensus disorder prediction 383 422 - -
Ssu5g1001 969 MobiDBLite consensus disorder prediction 383 417 - -
Ssu5g1001 969 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Ssu5g1001 969 MobiDBLite consensus disorder prediction 754 772 - -
Ssu5g1001 969 SMART hdac_interact2seq4b 446 548 IPR013194 -
Ssu5g1001 969 MobiDBLite consensus disorder prediction 819 845 - -
Ssu5g1001 969 MobiDBLite consensus disorder prediction 1 38 - -
Ssu5g1001 969 Coils Coil 521 541 - -
Ssu5g1001 969 Gene3D Paired amphipathic helix 292 360 IPR036600 GO:0006355
Ssu5g1001 969 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Ssu5g1001 969 Pfam Paired amphipathic helix repeat 311 355 IPR003822 GO:0006355
Ssu5g1001 969 MobiDBLite consensus disorder prediction 750 783 - -
Ssu5g1001 969 SUPERFAMILY PAH2 domain 296 358 IPR036600 GO:0006355
Ssu5g1001 969 MobiDBLite consensus disorder prediction 854 873 - -
Ssu5g1001 969 MobiDBLite consensus disorder prediction 11 38 - -
Ssu5g1001 969 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 137 688 - -
Ssu5g1001 969 PANTHER SIN3B-RELATED 1 134 IPR039774 GO:0003714
Ssu5g1001 969 PANTHER SIN3B-RELATED 137 688 IPR039774 GO:0003714
Ssu5g1001 969 Coils Coil 916 957 - -
Ssu5g1001 969 MobiDBLite consensus disorder prediction 184 273 - -
Ssu5g1001 969 ProSiteProfiles PAH domain profile. 289 358 IPR003822 GO:0006355
Ssu5g1001 969 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Ssu5g1001 969 Pfam Sin3 family co-repressor 448 540 IPR013194 -
Ssu5g1001 969 MobiDBLite consensus disorder prediction 188 269 - -
Ssu5g1001 969 MobiDBLite consensus disorder prediction 819 890 - -
Ssu5g1001 969 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 134 - -
Ssu5g1001 969 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1001 Ssu-Chr5 31825824 31834018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1001 28 119 WRKY Transcription Factor Family AT4G12020 58.511 4.05e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g1001 Sin3_corepress 3.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1001 K11644 - gmx:100781798 1247.26