Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0999 ATGAGGGGAGGAAAACAAACACCGTCCATGGATGATGCCTTAGCATATGTCAAGAGAGTAAAGGATACACTTCAAGATGAGAAGGAAAAGTACGAAATCTTCTTGGACGTGTTGAAGGATTTCAAGGCTCGAAGAATTAATGCGGGGAGTGTCACGGCTAGAGTGAAGGCGCTATTTAAAGGACATAGAGATCTACTAGTGGGATTTAATTTCTTCTTGCCAAAGGAATATGAAATCATACTTCCATTGGAGGATGAACAACCCCCACAGAAGGTGCCTGTTGAACttgtaaaagacaaaaattttgCGGGCAAGATAAAGCTAGGATCAACTACGAGTGGAGGTGAACAGACACCATTCATAAATGATGCCATAGCATATGTCAATGCAGTAAAGGATACATTCCAAGATGAGAAGGAAAAGTATGAAAACTTTTTGTATGTCATGAAGGATTACTTGGATCGAAGAATTGATGTAGGGGGTGTCACGGTAAGAGTGACTGAGCTACTTAAAGGACATAGAGATCTACTTGTGGGATTTAATGCCTTCTTGCCAAAGGAATATGAAATCACACTTCCATTGGAGGAGCCTGTTGAATTTGCAGAAGATATAAATTTTGTGGACAAGATAAAGGCATGGATTCAAGGGGATGATGGTGTTTATAGGTCATTTCTACACATATTAGATACATATAGAAGACAGGCTGCCGAACTTTTGCAGGGCCACGCGGATCTTCTCAGTCAGTTCACTAAACTTTTTATTGAAAGTACAGAAGATCAAGCTCGTCCAGCACGTAGTCTCCTATTTTTAAACTCAGTGACATGCATGTATGGGAGATGA 840 0.3988 MRGGKQTPSMDDALAYVKRVKDTLQDEKEKYEIFLDVLKDFKARRINAGSVTARVKALFKGHRDLLVGFNFFLPKEYEIILPLEDEQPPQKVPVELVKDKNFAGKIKLGSTTSGGEQTPFINDAIAYVNAVKDTFQDEKEKYENFLYVMKDYLDRRIDVGGVTVRVTELLKGHRDLLVGFNAFLPKEYEITLPLEEPVEFAEDINFVDKIKAWIQGDDGVYRSFLHILDTYRRQAAELLQGHADLLSQFTKLFIESTEDQARPARSLLFLNSVTCMYGR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0999 279 PANTHER SIN3B-RELATED 5 106 IPR039774 GO:0003714
Ssu5g0999 279 PANTHER SIN3B-RELATED 116 252 IPR039774 GO:0003714
Ssu5g0999 279 SUPERFAMILY PAH2 domain 121 188 IPR036600 GO:0006355
Ssu5g0999 279 SUPERFAMILY PAH2 domain 7 77 IPR036600 GO:0006355
Ssu5g0999 279 ProSiteProfiles PAH domain profile. 196 256 IPR003822 GO:0006355
Ssu5g0999 279 ProSiteProfiles PAH domain profile. 116 187 IPR003822 GO:0006355
Ssu5g0999 279 Gene3D Paired amphipathic helix 195 257 IPR036600 GO:0006355
Ssu5g0999 279 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Ssu5g0999 279 Gene3D Paired amphipathic helix 123 185 IPR036600 GO:0006355
Ssu5g0999 279 Pfam Paired amphipathic helix repeat 29 73 IPR003822 GO:0006355
Ssu5g0999 279 Pfam Paired amphipathic helix repeat 140 184 IPR003822 GO:0006355
Ssu5g0999 279 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Ssu5g0999 279 SUPERFAMILY PAH2 domain 193 253 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0999 Ssu-Chr5 31628962 31632639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0999 12 88 WRKY Transcription Factor Family AT4G12020 53.247 2.46e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g0999 PAH 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0999 K11644 - cam:101488742 180.644