Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0998 ATGTGTTCCGCAGAGAAGGACGGGATCATGCTCTTCGGCGTGCGCCTCACCGTAGCCGATAACGACCCCACCTCCTTCAGAAAGAGCGCCAGCATGAACAATCTCTCCCTGTACGAGCCCCCGCCGCCGCACGATCCCAACGCGGGTTACGCCTCGGACGACGTCGTTCACCCCTCCCGTCGCACGCGCGAACGCAAGCGAGGTGTCCCGTGGACGGAGGAGGAGCACAGGCTGTTCCTGATGGGATTACAGAACGTTGGGAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTGAAGACCCGAACGCCCACTCAAGTTGCCAGTCATGCTCAGAAATACTTTCTCCGCCGTCACAGCCAGAGCCGCCGCCGCCGGAGATCTAGTCTCTTCGACATCACCACCGACACGGTGATGGAGTCGTGGACGGTAAAGGAAGGGGAACAAGCGGTGCCATCAGGTAGGTCGAAACCGGTTCTGCCGGTGCCCCCGTCGTCAAAGATGGCTGAGTTGGACTTCAGAGGGAAGTCACTGTCGCTGAAGCTGCCGGCGTCCAAGGGGGAGTCGCCGGCGACTTTTCAGCCTATGAATGCGGAGAATTTCGGCGGTGGCGGGGATAGCATTATCAGTGTTGCTTGA 639 0.5915 MCSAEKDGIMLFGVRLTVADNDPTSFRKSASMNNLSLYEPPPPHDPNAGYASDDVVHPSRRTRERKRGVPWTEEEHRLFLMGLQNVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHSQSRRRRRSSLFDITTDTVMESWTVKEGEQAVPSGRSKPVLPVPPSSKMAELDFRGKSLSLKLPASKGESPATFQPMNAENFGGGGDSIISVA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0998 212 ProSiteProfiles SANT domain profile. 66 119 IPR017884 -
Ssu5g0998 212 PANTHER KIN2 11 162 - -
Ssu5g0998 212 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Ssu5g0998 212 Gene3D - 69 120 - -
Ssu5g0998 212 ProSiteProfiles Myb-like domain profile. 63 115 IPR001005 -
Ssu5g0998 212 CDD SANT 70 115 IPR001005 -
Ssu5g0998 212 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 162 - -
Ssu5g0998 212 MobiDBLite consensus disorder prediction 146 167 - -
Ssu5g0998 212 MobiDBLite consensus disorder prediction 33 68 - -
Ssu5g0998 212 MobiDBLite consensus disorder prediction 182 212 - -
Ssu5g0998 212 SUPERFAMILY Homeodomain-like 65 118 IPR009057 -
Ssu5g0998 212 SMART sant 67 117 IPR001005 -
Ssu5g0998 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 119 IPR017930 -
Ssu5g0998 212 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 66 117 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0998 Ssu-Chr5 31597214 31598221 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu5g0998 Myb_DNA-binding 9.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0998 - - gmx:778091 322.013