Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0997 ATGCCGTCTCACGCGGATCTGGAGCGTCAGATCGAGCAGCTGATGGAGTGCAAGGCTCTGGCGGAGTCGGAGGTGAAGGCTCTGTGCGATCAGGCTCGGGCGATTCTGGTGGAGGAGTGGAACGTGCAACCGGTGAAGTGCCCCGTCACCGTTTGCGGCGATATTCACGGCCAGTTCTACGATCTCATCGAGTTGTTCCGGATTGGAGGCAACGCCCCCGATACCAATTACCTCTTCATGGGTGATTATGTAGTGGAGACTGTTACGCTTCTGGTGGCATTGAAAGTCCGTTACAGAGATAGAATCACAATTCTCAGAGGAAATCATGAAAGCCGTCAAATTACGCAAGTGTATGGCTTCTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACGGACTTGTTTGATTATTTACCTTTGACTGCCCTCATTGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAATATCAGAGCATTGGATCGTATACAAGAGGTTCCACATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCTGATGATCGCTGTGGATGGGGAATATCTCCACGTGGTGCTGGATACACATTTGGACAGGATATAGCTGCTCAGTTTAATCATACCAATGGTCTCTCCCTGATATCTAGAGCTCATCAACTTGTTATGGAAGGATACAATTGGTGCCAGGAAAAGAATGTGGTGACCGTATTTAGTGCTCCGAATTACTGTTACCGATGTGGGAATATGGCTGCCATACTAGAAATAGGAGAGAATATGGATCAGAATTTTCTTCAGTTTGATCCAGCTCCTAGGCAAATTGAGCCTGACACCACACGCAAGACACCAGattattttttgtaa 903 0.4629 MPSHADLERQIEQLMECKALAESEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0997 300 SMART pp2a_7 20 284 IPR006186 GO:0016787
Ssu5g0997 300 Pfam Calcineurin-like phosphoesterase 48 233 IPR004843 GO:0016787
Ssu5g0997 300 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 300 - -
Ssu5g0997 300 Gene3D - 2 300 IPR029052 -
Ssu5g0997 300 ProSitePatterns Serine/threonine specific protein phosphatases signature. 105 110 IPR006186 GO:0016787
Ssu5g0997 300 CDD MPP_PP2A_PP4_PP6 6 284 - -
Ssu5g0997 300 PRINTS Serine/threonine phosphatase family signature 104 128 IPR006186 GO:0016787
Ssu5g0997 300 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Ssu5g0997 300 PRINTS Serine/threonine phosphatase family signature 139 165 IPR006186 GO:0016787
Ssu5g0997 300 PRINTS Serine/threonine phosphatase family signature 246 262 IPR006186 GO:0016787
Ssu5g0997 300 PRINTS Serine/threonine phosphatase family signature 224 244 IPR006186 GO:0016787
Ssu5g0997 300 PRINTS Serine/threonine phosphatase family signature 168 195 IPR006186 GO:0016787
Ssu5g0997 300 Coils Coil 4 24 - -
Ssu5g0997 300 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 300 - -
Ssu5g0997 300 SUPERFAMILY Metallo-dependent phosphatases 6 287 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0997 Ssu-Chr5 31567838 31572129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0997 49 219 Calmodulin-binding Proteins AT5G63870 35.047 1.26e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0997 K04382 - gmx:100783950 619.002